3300007751: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co14ic 200bp-25jan2016

Overview

Basic Information

• IMG/M Taxon OID: 3300007751
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124801 | Ga0105549
• Sample Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co14ic 200bp-25jan2016
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 182683688
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064809	Metagenome	128	N
F085224	Metagenome	111	N
F087060	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105549_1034348	Not Available	957
Ga0105549_1074360	Not Available	685
Ga0105549_1128691	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105549_1034348	Ga0105549_10343482	F087060	MTQSHTTSNDTSAKQVVRTLSGITQGKPVVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENERVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG*
Ga0105549_1074360	Ga0105549_10743602	F064809	MEISMLTTTFTGNITFAEIVSQDGQGNNLDNPFLAIKVAVNDVNDNGLTIAVRTKNGLLEAAQNGEDLVGTRVVIAGSIELPSIRSHWVDNDGNLVALKKPQCRVYANTIERLNRKPAPDTVQKELAIK*
Ga0105549_1128691	Ga0105549_11286911	F085224	LLRFKAIVMFPYSVFSGMMLELLEMGAPMFYPSKSLLKRWDEQYGIMTQRTSAEGKRNAGGFSNVAYGKDSAPDPNDSVNQDALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIRRDLTKTNSSGV*