3300007657: Human stool microbial communities from NIH, USA - visit 2, subject 158479027 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007657
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052770 | Ga0105536
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 158479027 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158014242
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F047126	Metagenome	150	N
F051210	Metagenome / Metatranscriptome	144	Y
F067844	Metagenome	125	N
F071326	Metagenome / Metatranscriptome	122	Y
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105536_100029	Not Available	128549
Ga0105536_100416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	39455
Ga0105536_100789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	27876
Ga0105536_101216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	20384
Ga0105536_101915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14476
Ga0105536_101937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	14338
Ga0105536_102037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13732
Ga0105536_104064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7342
Ga0105536_105159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5748
Ga0105536_109832	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	2798

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105536_100029	Ga0105536_100029124	F071326	MADMVSKNLDKANKLYSIGMKNIKLQLKLLGTEFVVLRPNEKSKWKNVFGGSYSSSSTLENDYDQFTTKLILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIVETLDM*
Ga0105536_100029	Ga0105536_100029141	F051210	MNTQYLQMMQTPSMMEALINSSVSTEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTANTDYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKITNGTINYLNGRVEFTLATALAGDAATESITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMSDLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTAYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAQGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI*
Ga0105536_100416	Ga0105536_10041634	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITP
Ga0105536_100789	Ga0105536_10078928	F099451	MEIKSVGQLRKIIENLSDDYEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDIGVSDKVLCLGVTSNR*
Ga0105536_101216	Ga0105536_10121610	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKGDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*
Ga0105536_101915	Ga0105536_10191512	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSECRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0105536_101937	Ga0105536_1019379	F029444	MEVSEQLTGFEPEDLMPWTVSNLQRPFREDFSLEKSGIIAEKESQILGCRFVGFDEPKKAAPFFNF*
Ga0105536_102037	Ga0105536_1020371	F087334	MASRSPFVGAAVHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0105536_104064	Ga0105536_1040646	F029444	MEVSEQLTGFELEDLMSWTVFNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0105536_105159	Ga0105536_1051595	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYRRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0105536_109832	Ga0105536_1098323	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPRPALKFY*
Ga0105536_109847	Ga0105536_1098473	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNRLI*
Ga0105536_112718	Ga0105536_1127186	F047126	RYCLKAKSLGILCGFQGFLAQNPAALVETDDIFDISDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAVASQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC*
Ga0105536_119476	Ga0105536_1194761	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS*
Ga0105536_133832	Ga0105536_1338321	F089053	MEGPRPDKFASSEKLERVVDGCRPIKGCIKKRIYESANGRLKLSTAEEVNVKNMEASL*
Ga0105536_136794	Ga0105536_1367941	F076064	LPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*