3300007633: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300007633
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125928 | Ga0102940
• Sample Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 709727192
• Sequencing Scaffolds: 34
• Novel Protein Genes: 40
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	26
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	1
All Organisms → Viruses → environmental samples → uncultured virus	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4965
  • Long. (^o): -122.133
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F007787	Metagenome	345	N
F008719	Metagenome / Metatranscriptome	329	Y
F009454	Metagenome	317	Y
F011397	Metagenome / Metatranscriptome	291	Y
F032166	Metagenome	180	Y
F033769	Metagenome / Metatranscriptome	176	N
F034100	Metagenome / Metatranscriptome	175	Y
F038111	Metagenome	166	N
F039953	Metagenome / Metatranscriptome	162	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102940_1029649	Not Available	2623
Ga0102940_1070659	All Organisms → Viruses → Predicted Viral	1552
Ga0102940_1072097	Not Available	1533
Ga0102940_1080750	Not Available	1431
Ga0102940_1093747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa	1309
Ga0102940_1104144	Not Available	1230
Ga0102940_1119160	All Organisms → Viruses → Predicted Viral	1135
Ga0102940_1132006	Not Available	1068
Ga0102940_1153253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	977
Ga0102940_1156069	All Organisms → Viruses → environmental samples → uncultured virus	966

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102940_1029649	Ga0102940_10296495	F086685	MIELTTIPLVVWVIGCITFVILGHELTHYIAWLPVATSIEYHFEDQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWDPIATWHHITASAAVVLYGVSGGKSDFQALLNLGRTRRSPAADD*
Ga0102940_1053699	Ga0102940_10536995	F100427	EWDVWGNELEIEHIATPWAMRWAIIASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102940_1070659	Ga0102940_10706593	F005874	MRMHARKQTMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPADWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDDQREWL*
Ga0102940_1072097	Ga0102940_10720975	F056354	MILPVFIALSITAVVITGLAIRGDIPELLGAAVGAIMSIVAGINALDLFVITNSGNVKDIDPQTDIALILLVIFVINLIFIFD
Ga0102940_1080750	Ga0102940_10807502	F050177	MARVPSDPADDALTPQQLAERVDQVTNLTVEELEAFRESEYNEEYLAANSERAQRGNEPLDDVIRLLETPPEEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102940_1093747	Ga0102940_10937472	F088532	MTTLKLTDNEMQALAGLLDAGVKAIGLRAVKDAAPILEKLEAASQTESQKEDATDG*
Ga0102940_1104144	Ga0102940_11041444	F007787	MGKTKELAVMLNAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLTEVINTFSEALKKDLNIPENETTLNGVHFKTRQGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF*
Ga0102940_1119160	Ga0102940_11191602	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD*
Ga0102940_1132006	Ga0102940_11320063	F039953	MLANPLELRGRHRVNNMNPEIPVIEGWGNSTIEAYTGNHIGHRVPRKHLKVDTAP*
Ga0102940_1153253	Ga0102940_11532531	F054750	MKEIEELNEYVNQYYKCDRTNGEELLLLQQKISGLLYYLETVRSQQHDAFESKVFELVQEGKSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR*
Ga0102940_1156069	Ga0102940_11560693	F062297	MSMDDLERCPRRYTVLAERTEAGRVVEQSVTGQSRAEELFERWDEGEQLCNLRVKAISAPMDDVTRHFEHDWPPTNNSPVTSADDGSTETATKGWETR*
Ga0102940_1168303	Ga0102940_11683031	F032166	DAIRLLETPGYEYSAVDDGFNEVEEARELLDFQRRTQAQILSQGLGENFLTDARDMQKREAASIRWGIDPDEEREWL*
Ga0102940_1168659	Ga0102940_11686592	F050177	MARVPSDPPDDALTPQQLADRVDDVVNLTVEELEAFRDSEYNEEYLEYNSERAQAGNEPLDDVITLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIESQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102940_1172487	Ga0102940_11724873	F075754	MKYQTDLRWHTPMNPWEPIHVRVDDSSEWYRTQVERGDYLRDTEEDAEMSHREHGLVAEGIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLLPKKEARAKPSTNYYAVVRKHPDYWLIGHINSVRFWYLCDRTRPEWWNEGTYEGGHLTYEHFK
Ga0102940_1175404	Ga0102940_11754044	F073153	MSEQDMPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEARIE*
Ga0102940_1178963	Ga0102940_11789632	F066493	VSQSREWTDGVIDVADELVQEHSAEGAIERLQRRRQTSDDELQARCNEAIAWIRREVQSDE*
Ga0102940_1183126	Ga0102940_11831262	F072017	MSLNQTPSFDSQSDTDIKSTVRKQDAIHTAVQEHMDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVDQ*
Ga0102940_1200597	Ga0102940_12005971	F086685	MIDITTIPLVLWVLGCITFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLLLALIATGWQPTATWHHITASVAVLLYGISGGKSEFDALFNL
Ga0102940_1205734	Ga0102940_12057342	F087432	MIIYENGEYTPCTYRVTLENRGVEETHYANFRTYWEDMVAKHDHLTNLSFEEITYSDEQNARLQEVAELNITQGFQSEVRTYVETGEFPEGYHHPLSDLKLAKENEQHQNDVDEAYQMILESEGLI*
Ga0102940_1209827	Ga0102940_12098272	F033769	MSVNCGIKTATNTPATVGVATGRKYLRLTNESTDMRCRAGDDGISNTAGIIIEPGETVEFRPLPSDNTDIYVMSEGKATKLAYYEVL*
Ga0102940_1241052	Ga0102940_12410522	F099972	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN*
Ga0102940_1245953	Ga0102940_12459531	F008719	SFSDDALKRQQVAEHIQVKMAYQMKVTGADLGGFINSAIS*
Ga0102940_1245953	Ga0102940_12459532	F097996	MTINRDGMHPRYLGFQRVEPVFVKIPFVSDGKNWKKSEHFNWAERDIEEKDAASLYATGHIYHNSELAKANKVGDRLGELNKEQLHSLVVQLNSIVKERTTTTKEFQDKRCKQSKIEDKQRGLIRRFLNRNPYIVEDFYRLRDYTLGN*
Ga0102940_1251528	Ga0102940_12515281	F005874	MGYGIPDDPPDRDLTPQQLHERIDEVTNLSADELRAFKDSDFNSTYNRVKSDAAQPGDEPLDDVIRLLETPASEYRDMDDGFNEIEEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWL*
Ga0102940_1264735	Ga0102940_12647351	F009454	VLEEKLQDFKMPNFEEIEAAILEVQQPRSRFQLERFVIGQHKSEEMQFYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPNYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
Ga0102940_1304532	Ga0102940_13045322	F049640	ARTSRGASAAGSVALPMVTERTAMEPRRIKVDLLPHERAALLKGGFTINDVHDQLVACASSPHVETITFTGADIHLLAGDLNHAIVKRGFRDVDILDLSDRMDYINDTSDGSLDRWY*
Ga0102940_1304750	Ga0102940_13047501	F104555	LDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF*
Ga0102940_1308981	Ga0102940_13089811	F075754	MNPWEPIHVRVDDSSDWYRTQVERGDYLRDTEEDAEMSHREHGLVAEAIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLPPKKEERAKPSTNYYAVVRKHPDYWLIGHINSVRFWYLCNRTMPEWWNEQDYEGGHLTYEHFKQIKTGVGITPPPAIEVFGQG*
Ga0102940_1318820	Ga0102940_13188201	F063375	VGGHLQTVIAYGGVFMAGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQLLEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102940_1320205	Ga0102940_13202051	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102940_1331678	Ga0102940_13316781	F032166	AAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102940_1336676	Ga0102940_13366762	F075754	MMTSYQAGIEWHTPMNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSVRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPVSEPI
Ga0102940_1337723	Ga0102940_13377232	F011397	MKDFELLKRTYPVSEFDRQCDGFAYICDNTSVEERMEWRINLKELQHIIKSGEKYIYQVAKEGKVFKAMCLSFSNYEIIRKYIFRIDDE*
Ga0102940_1401842	Ga0102940_14018423	F062489	MTAPDAIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVGESLAIDCPEGRR*
Ga0102940_1422912	Ga0102940_14229122	F056354	MILSVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNTGNVKDIDPQTDIALILLVIFVINLIFIFDRAFSGGN*
Ga0102940_1429147	Ga0102940_14291472	F034100	MQLVKIEQQFEENPYLTVPIQENLLYDLPFKDFDKDGYEVPSPLEHLHYLENWVPLNREIQFHIAPVKPWYEDVEESEFGLVLDHCMLLSRWAFAGEARAKIEQAAKERPIL
Ga0102940_1436945	Ga0102940_14369451	F090210	DAEKGLVLDHCMLLTRFAFAGEARVQLEEVALERPILYKMLGIKPKWGIDFSLDYISQEICMEVIHIEQDFDNLEDAVAAKQKLENIIETTDWQAGAEELIARKSEWIDLSSDDHSDYKAQFFGVHRAFDNRKVFSS*
Ga0102940_1462737	Ga0102940_14627372	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTV
Ga0102940_1474122	Ga0102940_14741221	F005874	MGYGIPDDPPDQDLTPQQLHDRIDEVTNLSADELRAFKDSDFNEAYNMAKSDAAQPGDEPLDDVIRLLETPASEYRDMDDGFNEIEEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDELEWL*
Ga0102940_1474466	Ga0102940_14744661	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVDELRAFKASEYNEAYNATKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRWGIDPDDEREWL*