Sample 3300007631

Basic Information
IMG/M Taxon OID	3300007631 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125935 \| Ga0102939
Sample Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	353018812
Sequencing Scaffolds	37
Novel Protein Genes	39
Associated Families	23

Dataset Contents

Total Genome Size

353018812

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
Not Available	21
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1
All Organisms → Viruses → environmental samples → uncultured virus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287

All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus

All Organisms → Viruses → environmental samples → uncultured virus

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Ecosystem Assignment (GOLD)

Name

Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → pond → saline water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4961	Long. (^o)	-122.1331	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

South San Francisco, USA

Coordinates

Lat. (^o)

37.4961

Long. (^o)

-122.1331

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F009454	Metagenome	317	Y
F018646	Metagenome / Metatranscriptome	234	Y
F026202	Metagenome	198	Y
F038111	Metagenome	166	N
F041612	Metagenome	159	N
F054456	Metagenome	140	N
F062489	Metagenome	130	Y
F066493	Metagenome	126	Y
F066527	Metagenome / Metatranscriptome	126	N
F066711	Metagenome / Metatranscriptome	126	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102939_1010079	All Organisms → Viruses → Predicted Viral	3141	Open in IMG/M
Ga0102939_1012766	All Organisms → Viruses → Predicted Viral	2784	Open in IMG/M
Ga0102939_1016898	All Organisms → Viruses → Predicted Viral	2388	Open in IMG/M
Ga0102939_1023139	All Organisms → Viruses → Predicted Viral	2012	Open in IMG/M
Ga0102939_1025372	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1916	Open in IMG/M
Ga0102939_1026345	All Organisms → Viruses → Predicted Viral	1877	Open in IMG/M
Ga0102939_1033773	Not Available	1631	Open in IMG/M
Ga0102939_1034399	Not Available	1614	Open in IMG/M
Ga0102939_1036621	All Organisms → Viruses → Predicted Viral	1558	Open in IMG/M
Ga0102939_1042386	All Organisms → Viruses → Predicted Viral	1429	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0102939_1010079

All Organisms → Viruses → Predicted Viral

3141

Open in IMG/M

Ga0102939_1012766

All Organisms → Viruses → Predicted Viral

2784

Open in IMG/M

Ga0102939_1016898

All Organisms → Viruses → Predicted Viral

2388

Open in IMG/M

Ga0102939_1023139

All Organisms → Viruses → Predicted Viral

2012

Open in IMG/M

Ga0102939_1025372

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

1916

Open in IMG/M

Ga0102939_1026345

All Organisms → Viruses → Predicted Viral

1877

Open in IMG/M

Ga0102939_1033773

Not Available

1631

Open in IMG/M

Ga0102939_1034399

Not Available

1614

Open in IMG/M

Ga0102939_1036621

All Organisms → Viruses → Predicted Viral

1558

Open in IMG/M

Ga0102939_1042386

All Organisms → Viruses → Predicted Viral

1429

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102939_1010079	Ga0102939_10100791	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDD
Ga0102939_1012766	Ga0102939_10127661	F038111	MIHRVPVVNRPEYTIWLENYKGIANFIHADVYKYNKTVREDFGKNLDKLMDLHVDPLYVLTETDNKKLKKFMSIYGLELDHRPNCNDGVAREVFRLTRRQ*
Ga0102939_1016898	Ga0102939_10168982	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEDFYTIRDTILGD*
Ga0102939_1023139	Ga0102939_10231393	F066711	VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKIYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFDI*
Ga0102939_1025372	Ga0102939_10253722	F066493	MRQSREWDDGLIDVAGELVKEHSAEGAIERLQRRRQTSDDELQARCNEAIAYIRREVQDE
Ga0102939_1026345	Ga0102939_10263456	F079661	PWTADMTKTTIELPESTRDKLKAERKPHESNYGETIERLLGDTSGGSLWTEQEIRDMIEREIEQHARH*
Ga0102939_1033773	Ga0102939_10337732	F089940	MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD*
Ga0102939_1034399	Ga0102939_10343996	F089940	AFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTEEDDT*
Ga0102939_1036621	Ga0102939_10366211	F089905	MRTVKEVEQDIREAESAQAETEFSSTMWDSLNAEITGLHAELKRATYHWDRLKLCGMMGVDTH
Ga0102939_1042386	Ga0102939_10423861	F094957	NTMKALTGYMAQINAHLEIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGTLSRAEVEQRTNTWLDAITELDAIEQELTA*
Ga0102939_1043193	Ga0102939_10431931	F026202	MKNVVSCDAASKAAVLSVSSKELLVRASVLAELDLNDMGGTMLPVEVLWASQSRLEGCGWCWGSASACSGCH*
Ga0102939_1047500	Ga0102939_10475002	F094957	MKALTEYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTRAEVEARTNTWLDAITELDAIEQELTA*
Ga0102939_1053949	Ga0102939_10539493	F096726	MTRDEWIDPADTEASIRDHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSQSQYDPITVRFVEDGGE*
Ga0102939_1058408	Ga0102939_10584081	F041612	RDLLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA*
Ga0102939_1065477	Ga0102939_10654772	F066493	MSQSREWTDGVIDVADELVQEHSAEGAIERLERRKESTRSDDLEARCREAIDWIESEVQSDD*
Ga0102939_1070061	Ga0102939_10700613	F091393	MSEKKTAEEIAQYYNAAMDSVNLINKGQQEDMSDE
Ga0102939_1090678	Ga0102939_10906782	F089940	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDNDDN*
Ga0102939_1097993	Ga0102939_10979933	F104555	DLSFRSVLTMRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVSDCF*
Ga0102939_1102255	Ga0102939_11022551	F062489	MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEIVEELAIDAPERER*
Ga0102939_1117530	Ga0102939_11175302	F054456	VNAMYEPTLDFKTDTEQLSPAQAHDRWEDVTNLDTPELERLEDSRRNELYLDAAAGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTLPQFEQSEGEPLIEDESPKIHKDELSIMRWGVDPNPEDDFL*
Ga0102939_1121164	Ga0102939_11211641	F079661	MSNTTIQIPESVRDELRDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIELVTR
Ga0102939_1125859	Ga0102939_11258592	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*
Ga0102939_1127206	Ga0102939_11272062	F098765	ASATDTAPLAVTQQIDPAAHGTVGGAGGVTIETG*
Ga0102939_1130434	Ga0102939_11304342	F097996	FVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRAVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGE*
Ga0102939_1130782	Ga0102939_11307822	F097996	MATNTDGMHPRYLGFQVDWPVFVKMPFSADGHAWKRQEHFNWAERGIDQKQVATLYATGHIYHNYELEKQNKVGDRLGELNSEQLKRLVVQLNDIVKRRTTTTKEFQDKRCKQSKLEDKQRGLVRRFLNRNQWILEDFYEIRDYILSE*
Ga0102939_1144431	Ga0102939_11444311	F066527	MTNRFYHEDLLDEFGDDLERIFGPIEERTRGLTSLAGQPDGDLKALIKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSIDPATGKSIFYGYNLPYFITEERVQGVEEFAWDEIYIDYNVQRNIDVAHIIKDILVEWDTKLCDPAHCRMQSDNSLDVNDSQHATCARALVGAAVCPATYIVSDAKSD
Ga0102939_1155155	Ga0102939_11551552	F038111	MIHRVPVVNKNNYTIWLENYRHIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102939_1172339	Ga0102939_11723391	F009454	AILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPSYWDERLTGNGKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
Ga0102939_1176123	Ga0102939_11761231	F062489	AIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPGGER
Ga0102939_1176183	Ga0102939_11761831	F089940	MKYAAAFFIVLGLGIVAGAETQDWFPMFAAQVALGVVTLITGGLFAAQIDTDD*
Ga0102939_1180665	Ga0102939_11806652	F098765	VELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG*
Ga0102939_1187763	Ga0102939_11877632	F079661	MSDTTIQIPESVRDELKDERLPHESNYGETIERLLGDSTGGQLWTEHELKDLIDHRIQFHRR*
Ga0102939_1196841	Ga0102939_11968412	F038111	MIPSKVPVVNNPDYTIWLENYRNIATFIHADVYKYNKSVRQEFGEDLDKLLRLHNFPLYVLTNKDNTKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV*
Ga0102939_1201698	Ga0102939_12016981	F018646	MLKRENLPPFKKLPYNFDVEKIQEVLRQMPHVDDLKVKNGYGDKVGGKSSKLQKAFGLKFNTIEDAYEWLQKNDVAESELSKGLNGKRMAWDFRNYVKPFENYIQKDDEGKYEVNGSPYKQIALTEYNPESENRVYDKKIPKSRLDERH
Ga0102939_1209449	Ga0102939_12094492	F062489	MPGPDAIVIRERRAEGPTRRYVYHPLAAGGYERTEELWREAKDGWHTTGTEVVAALAIEHPGDGSLTIGTE*
Ga0102939_1209452	Ga0102939_12094521	F099972	TMPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL*
Ga0102939_1217424	Ga0102939_12174242	F098766	MTHPRCAICGYEAHGDDYVRVEVERVPPEKPPETYYFHTRCFDRTQAWERDL
Ga0102939_1219461	Ga0102939_12194611	F083454	MSDKTTIGLKISHERNARIERKVDDENYSSRQAYIRELIDDDLGGFDTTVESTTTEHTPDDRRDAEIYEALLDSIPLKGWTRYDRFKG
Ga0102939_1223418	Ga0102939_12234182	F072017	MSLNQTPSLDSQSDTDIKSTVHKHDAIHRLTQEHIDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVEQ*

Showing 1 to 39 of 39 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007631: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences