Sample 3300007594

Basic Information
IMG/M Taxon OID	3300007594 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125882 \| Ga0102774
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300007594 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114292 | Gp0125882 | Ga0102774

Sample Name

Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	67542494
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	20

Dataset Contents

Total Genome Size

67542494

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	5
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201

All Organisms → cellular organisms → Archaea

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic Ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

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Family	Category	Number of Sequences	3D Structure?
F003068	Metagenome / Metatranscriptome	509	Y
F003492	Metagenome / Metatranscriptome	483	Y
F005911	Metagenome / Metatranscriptome	386	Y
F016280	Metagenome / Metatranscriptome	248	N
F017397	Metagenome / Metatranscriptome	241	N
F018809	Metagenome / Metatranscriptome	233	Y
F019484	Metagenome / Metatranscriptome	229	Y
F019655	Metagenome / Metatranscriptome	228	Y
F021211	Metagenome / Metatranscriptome	220	Y
F021310	Metatranscriptome	219	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102774_1000520	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	527	Open in IMG/M
Ga0102774_1001926	Not Available	1671	Open in IMG/M
Ga0102774_1003520	Not Available	686	Open in IMG/M
Ga0102774_1004558	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	784	Open in IMG/M
Ga0102774_1038916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	532	Open in IMG/M
Ga0102774_1091214	Not Available	1391	Open in IMG/M
Ga0102774_1099525	All Organisms → cellular organisms → Archaea	734	Open in IMG/M
Ga0102774_1103532	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	506	Open in IMG/M
Ga0102774_1119594	Not Available	553	Open in IMG/M
Ga0102774_1132035	Not Available	700	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0102774_1000520

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

527

Open in IMG/M

Ga0102774_1001926

Not Available

1671

Open in IMG/M

Ga0102774_1003520

Not Available

686

Open in IMG/M

Ga0102774_1004558

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

784

532

Not Available

1391

Open in IMG/M

Ga0102774_1099525

All Organisms → cellular organisms → Archaea

734

Open in IMG/M

Ga0102774_1103532

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

506

Open in IMG/M

Ga0102774_1119594

Not Available

553

Open in IMG/M

Ga0102774_1132035

Not Available

700

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102774_1000520	Ga0102774_10005201	F016280	DLALAKKHGSEPLKITSTEVDSRNVFDHASAELAKHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTGKGLKLDSNTLHALLRMLHCRPARFVKLGLVEDVKAARQAYKLGGRAC
Ga0102774_1001926	Ga0102774_10019261	F077350	LEVAVTDSALANQIQKTEADPNQADIQALLEELEGKLRGALDVLTPSVKAMCDNLHKAAADIRTDKDATMLWGTLNDLQVFLSLVQQICTSVGTQGPQVVEFDNALGESLGALETVVVDSEDPEEVALFIEESLIRAFDKWPEAEAELRKIAEV*
Ga0102774_1003520	Ga0102774_10035201	F005911	KKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDDVFHNGKFISLKVMVKKAIIIAADDPTATARAGSDMPYDLENSGVLIKYADADGNVIAATETGSGTDTIVADVQLFVNLAGTPDANSNSPYTDGDPFYYILMETANSGLAADDITVNLVQFPAGILATNDGGPQAEVSVILPQDDEE*
Ga0102774_1004558	Ga0102774_10045581	F021310	QATMNPSNNISMKDTRDGVVVQADGRTLLAKLVFAGSARLAECGLGIDELRAAFKKAHGEEASKGTLTYQLNEIDEDALQLLDDADLALAKKHGSEPLKITSTEVDARNVFDHASSELANHGLDAPPTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTAKGIKLDANTLHALLRMLHCRPARFVKLGLVEDVKAARQAYKLGGRAC
Ga0102774_1038916	Ga0102774_10389162	F036277	LYSNPFVDKSTQYELHSPNKNKIDLNYLGSASLNV*
Ga0102774_1091214	Ga0102774_10912144	F021211	MAKEKKVDLRQEAETKMESLVEQHNTLVQELQSANERLAEVKQMIIEHQGYMKGLEACEKDCEVK*
Ga0102774_1099525	Ga0102774_10995251	F003492	MAELLTDDIIIEKLNEDGIMQEPDGPWLLEYIYENYGGQLDTTSDFVDDKWTLKIYSESTYDGYDIFWCTYEDRPYVSQDGYYYEDYSDWSTKALEELVNGSNVWVENHIWDSMEWDFNAEAEQWWQDVYEELYDEKKEELLDSGDYYIEKED*
Ga0102774_1103532	Ga0102774_11035321	F037241	ICHKMRRLLLPLLLASTTAAKSTYWKEVEAKKRRPAAAAYCPKRCFTTEASGDEKREVADLTCCSTAQGTIFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPRSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA*
Ga0102774_1119594	Ga0102774_11195941	F042354	VTSAFSQASVSAGLSYGSFNYDISGTKYTGDGGVLSLDGQLSPSLSYSLSMSDGKFDDVVFSDSQGSITYNVYPNIGIHFMGSQIRLSTVQETDTSLGVSYNINTSSLGLKVFVGSDINNYGKFYTYGTKINLGVAQGSSLILGYKTEDRKQKVTTMDVSFVYDLTSSLGLNLGYKSTETKNA
Ga0102774_1132035	Ga0102774_11320351	F003068	YKDKIMKKILAIVSVLSLFTFSANAIDTSDVSVTAGISANSAVYGATGKETNRDESNAIRDVENESGVFTDSHMSGFLELNVGEFISLGYEHTPDSITTPQNKRVTNQNSETTVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKEKMASGSTYANVSTEGSLIGVGYSQALQGGVAIRLEGSYMELDDVMTSNGVAKDGATVANGGRNQIDVSDMEGLNGKIALTFTFG
Ga0102774_1135662	Ga0102774_11356622	F018809	MGGAMIKNLIIIGLFTIVVTQTDIGINDVFNYVELALDKLQEMVYTMKRSV*
Ga0102774_1144768	Ga0102774_11447681	F051183	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSVRLKLEDKDNGYNYTTFINQNFEKDVNGVVTGMAFPDDLNTLYLAANKDINVSDVGEVNVDTLIDGEVACINYAATGKYKRATWGVVSSPNDTAELEKKFMAQIAKGYPKNYQKPQETMVEEMLGNREPVEAKETVDDLPF*
Ga0102774_1148103	Ga0102774_11481031	F019655	KAQEKASKLQKAAEDKGDLADTTATRDADQTYLDDLVAECTQKSSDFESRQQLRTDELAAIDKAIEILSSGAVSGNADKYLPSFVQTKTSVSFLQLSVGSKKPSQARVAEFLREKGSAINSRVLSALAVKVAEDPFVKVKKMIKDLIVRLMEEANEETEHKGWCDGELGANKVQREAKTEDVNTLTAQADQLTAD
Ga0102774_1150219	Ga0102774_11502191	F017397	LHKYCYPWLVLFFVVAPIMATVIYFQATRLDQCHRTKYSSKMWEKVGVGEEWCRLGPTVGLISDPIFVCYGIYMILMSIASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF*
Ga0102774_1155858	Ga0102774_11558582	F026877	MKTITLPDGTKEHTLPKWIGIQKPGEPMVKTKWRRTDMEYHNINGYTQMRNSIGSFTCTCKGYIFRKKCRHIEELRP*
Ga0102774_1167651	Ga0102774_11676511	F023863	MAMLALSSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGA
Ga0102774_1170129	Ga0102774_11701291	F022419	MSLRYAAILAPACAFTHPQQPRRIVVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSQFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLADTPLGQRRQLGTGTPKEDAPTKTDESTSSL
Ga0102774_1171786	Ga0102774_11717861	F005911	GGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDADNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATNDGGPQAE
Ga0102774_1184766	Ga0102774_11847661	F052625	MSPEVALLHDTWESIKHHVPKKERLNIAEVLVRTFDDNVNISEVEDHIMEFDSIMKAAIVSHFDIGLDEDEEDGDWE*
Ga0102774_1197363	Ga0102774_11973631	F019484	YFLTILGGSLKKIAKKITTRVPISKNAYTSASIFISNN*
Ga0102774_1198202	Ga0102774_11982023	F093978	KKAQLLLDEPLMKEAFNYLKTRYREEIFNTSYSDHNQRQVLWMAYNMVEKIKGHLESVMNEGKLAAKELDQLQDLTK*

Showing 1 to 21 of 21 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007594: Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences