Sample 3300007267

Basic Information
IMG/M Taxon OID	3300007267 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114916 \| Gp0124987 \| Ga0101447
Sample Name	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ12 time point
Sequencing Status	Permanent Draft
Sequencing Center	Australian Centre for Ecogenomics
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300007267 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114916 | Gp0124987 | Ga0101447

Sample Name

Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ12 time point

Sequencing Status

Permanent Draft

Sequencing Center

Australian Centre for Ecogenomics

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	82873772
Sequencing Scaffolds	23
Novel Protein Genes	29
Associated Families	28

Dataset Contents

Total Genome Size

82873772

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → unclassified viruses → Virus sp.	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → unclassified viruses → Virus sp.

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp.

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Ecosystem Assignment (GOLD)
Name	Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Ecosystem Assignment (GOLD)

Name

Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal water body → coastal sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	N/A	Depth (m)	1
Location on Map

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Location Information

Location

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

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Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F000754	Metagenome / Metatranscriptome	906	Y
F002125	Metagenome / Metatranscriptome	591	Y
F002192	Metagenome / Metatranscriptome	585	Y
F004819	Metagenome / Metatranscriptome	422	Y
F010091	Metagenome / Metatranscriptome	308	Y
F014026	Metagenome / Metatranscriptome	266	Y
F015078	Metagenome	257	Y
F017636	Metagenome / Metatranscriptome	239	Y
F017822	Metagenome / Metatranscriptome	238	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101447_100293	Not Available	15087	Open in IMG/M
Ga0101447_102709	Not Available	18176	Open in IMG/M
Ga0101447_103817	All Organisms → Viruses → unclassified viruses → Virus sp.	3413	Open in IMG/M
Ga0101447_104397	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2467	Open in IMG/M
Ga0101447_104944	All Organisms → Viruses → unclassified viruses → Virus sp.	2273	Open in IMG/M
Ga0101447_105320	Not Available	11306	Open in IMG/M
Ga0101447_107515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	4277	Open in IMG/M
Ga0101447_107965	All Organisms → Viruses → Predicted Viral	2679	Open in IMG/M
Ga0101447_108224	All Organisms → cellular organisms → Bacteria	6153	Open in IMG/M
Ga0101447_111213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3241	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101447_100293

Not Available

15087

Open in IMG/M

Ga0101447_102709

Not Available

18176

Open in IMG/M

Ga0101447_103817

All Organisms → Viruses → unclassified viruses → Virus sp.

3413

Open in IMG/M

Ga0101447_104397

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos

2467

Open in IMG/M

Ga0101447_104944

All Organisms → Viruses → unclassified viruses → Virus sp.

2273

Open in IMG/M

Ga0101447_105320

Not Available

11306

Open in IMG/M

Ga0101447_107515

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique

4277

Open in IMG/M

Ga0101447_107965

All Organisms → Viruses → Predicted Viral

2679

Open in IMG/M

Ga0101447_108224

All Organisms → cellular organisms → Bacteria

6153

Open in IMG/M

Ga0101447_111213

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

3241

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101447_100293	Ga0101447_10029315	F054876	MENSISLGLIHGLVYGIVPVAPWFVALKRYLLEGKEKGQLAVAGTVVGQVSLLALTFFGWSQVLWVWYYFEPALIILGTMAVVRCALDCWVEQPSSLQATVVPLANKKEGFYYFLVNFGLMFCNPTHFEGSQTLISSIPGNRYFYLVAFTITYTAIIFAFWATVGHRIFGKACSGFGAQQTLNRYRIRRVAVAMVAALFIQFGNCTPEALVIYHFDSLLAYTPFEQLKHFKTRGYTWEPVNNNGSEFTRQSPRSTNKSGILAEQNPRSYIQNKSMWNTETRYDECNQTRERELSNEDWNNEATFHEFNGINQATLHARLIPFNLYMVPNWEKHENKEYLLTLRKIRNEMDEKLLSEGSILEKAALLPFSDNWEYEVDYLTSPRLLEKNAESKASFEDMRKLIRKTKWTSDHLNLGNGNDIEASYGKLHKLPAEVRIPWHYPAIKPSETLNSADEVETLNAQIQSNVNFLANEPDRIQPNVYKRLWEYRNLGKVTPREFDPNRQERLDFEDAMRKKAYLFEYNERSK*
Ga0101447_102470	Ga0101447_1024704	F082635	LASHYASANQNEFKINAEIIDYDPSKKIISLDGAISMTSDDFQISGVTATISMNEEVISIEGNPARINLENPEKIFGEAKQIKYTPAKEISLVGEAVLRTKDGELKSKKILYQLGGSN*
Ga0101447_102709	Ga0101447_10270919	F049928	MYNFVTNREYTGMNYDTLARLSKGSEFAGFHQGKKFFGVKGTDLKGMKAAASVMFVVKKKNADGEEKKSIRYKSVFAKSDFEAAIARNRVLNPDRKVETISE*
Ga0101447_103817	Ga0101447_1038174	F043982	MYNILLFTSLGIAVLSLILCLYACARVGKFIKDTSGLDWAAIANITGDLSTLKKTIQTLNNRMNGMHSPKIQEQELMMQLLKNAPNQVTNGEIKNIGG*
Ga0101447_103817	Ga0101447_1038177	F058963	TTIRRLKNMCDMYDSLRPRATARRRTTGMKRATTTLIKN*
Ga0101447_104397	Ga0101447_1043975	F027652	MFKSLFPKFNKESFAQRLESVPKEFHKYMVEQQRFIRLRQSAQALLKRKKPLLEEMVSKVHAYERKNMDVYVLDDPTLTRDLVLIYRPDKSGANNNVSSLEITRLQKKIERYEEEIIKLQEKIYPRGTEETLSREERRNRIFPKGYYKNEVARRRPTKAEHDMDAMEPSLWKKPDTRTPFQKGEIVLSNLQKAGAEGHPVKWETPTDVDTQPEHIPVTYCDHIEEVTAATEPDHEITDEELVKICHYIRHIRRSTTFYNL*
Ga0101447_104944	Ga0101447_1049444	F043982	MYQILLYSSIILSTFTFFLCLYACARVGNFIKATEELDWSSVANITGDLATLKKTIQTLNNRMNGMHSPKIAEQELLMQLMTKQQNQQVNGKIQGG*
Ga0101447_105320	Ga0101447_10532015	F076159	ESISYPEYTEEDKKRGMNNKDLDFMTKNPMYWAVFLPSLFVIGFGLLPFITMFIFFDKPEFLKP*
Ga0101447_107515	Ga0101447_1075151	F002125	LKRKRLPQIYLSNFQTYLFYTAVIALVGEPSLTSVDLFVSKDTANLTFLRKLPQTIIEVQKVNK*
Ga0101447_107965	Ga0101447_1079653	F004819	MEFYPKDKNPMLDEGSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMNFYIQARTSETRDELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDITYHVTLHVQECNATDLAIYDNSNRGDFFDLSGNNLESPMADLERIVNGG*
Ga0101447_108224	Ga0101447_1082243	F017822	LGCAGVPTTRVRPYSWDDPYWKAEIYESKDPESVIVTEGDLYRNYREIATIYTEGRPKNKQEAFSLMRRLLCKFGADAVIKVRKKKNKNYEGIVVLFD*
Ga0101447_108906	Ga0101447_1089065	F083754	MKEKELEAKAAIYRKKWKAKMFLQSGSFFDEQNPKCGWEDNAPVINMPQSTEDVKEYFQKYEKQEAENNPTWWDRIGQKQSKIHQEIYELPENVQIYIAGLNMTIESQVLAPWEGVLSRFFYTQHEWDLFLILDMLKKTSDIYGMDDGPWPLYWFQSRELLFETLHRYPDLIKNRVGRSLPLRIWDQKDFVKEIVAVNFELFKSAPRHIKESRDKVLEAAKVDGRIIGFIKTNMRNDPEVAMTAVNSHADAKNYLFKKTKIELGLI*
Ga0101447_111213	Ga0101447_1112132	F085217	MKFKLFAILFALVFSAGIISHETSHFEMDHGEHAHNEHEVELTEDCSTCLAEQIEYVHDDTVVNPTTISFDFLDAYQPREITLSYNQLSIRAPPRN*
Ga0101447_111463	Ga0101447_1114634	F074010	MIKFSEIKDIHPKGSIWIGENRNKNDKTLLHSQALSFHENFLDVAKDVFTEDKRFADVTEHDWMQPLFDKLMKLLEDVGLGKYYVVQADFNKATDVPSHYRMLYVPCCTPDCIDLDIQTGEKGIFKLPLKEGSFIVMPPNSGIRIIAPPGKMFLGLIMGICKDDE*
Ga0101447_112596	Ga0101447_1125963	F060051	MARATVTEIDKRLSSHEAACEQRWKESYRRLEAIENGIASVNKTIRNTLLFIVTIFLGITGFLFQEIIYQAIG*
Ga0101447_113184	Ga0101447_1131843	F099340	MRTEINNLSFGTFFGSLLSFWYFDNRKAIHHPILLGWARWFPSGSVQVIDFIWKKLSKKIEKRAFFVNFHLSFLLKPQKIRFFGVFGVGY*
Ga0101447_113195	Ga0101447_1131952	F017636	MSRLEKKAQEEDNQKFASKKQGIFIFLPCWIAIGAGFLHIAMGLEATHYLITGSLLALVCGSLGQLRAKIIQQNQTIQILQEKLDEVSG*
Ga0101447_113592	Ga0101447_1135922	F070139	MLFCLRTNQFNRDIEELKIKLEFNKENIDKSDLFSLCPNLKQTRAKSNLSVLVIKNLFFNSIRNTFAIIFLFLLLGAPASLTYKLLDLMIYSDTFKVNAQTKNNLKKYIYFIDYIPVRLTSYCLSIVSNYDRVIDRINSLELSNNPYLSNIEYVNQTGESVFDASKSESDQIIQIQNILARTLIAWLSVIFLLGITGVFI*
Ga0101447_114267	Ga0101447_1142673	F073358	MVDTTNNVICIAEGCRKKLKGKQRKFCSPTCQKRQFARDKYYNKKVDTKPINIERKSDEGDYASVRRGQYYRAFVSEGIAEQVATGDMAVADAASLLGCTSATVSRMLAAYKIDTRNEVAAEEWELSKEAKAALENFSNXXXNIRHRRFSY*
Ga0101447_115959	Ga0101447_1159592	F091981	MTKENHSDAETSQETKKKSGTTGFIKEIGRDVGTDLLHETGTTIKWAVGGALIGAAVLGGLGFWKFGVTGLAIGAIAGGVVGGVVGGWFYFSA*
Ga0101447_116196	Ga0101447_1161963	F000613	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPNTQIIVAAAVDTVGTPSADTTMNFTVNNSEFSKDASVSALVTGEPFGWKGSYVMNDTIVTGAIRNRPVITFTNNTSATRTIDVAVFLSSQP*
Ga0101447_116245	Ga0101447_1162451	F064740	MPLESAADFNSYVDINTGHGVTATFSETSGTLWDSRTTLIDSWTDIDSGFSYSINIIIDQEYFNIEGGTVPVAGYQPRAIVKSTDVPY
Ga0101447_116521	Ga0101447_1165217	F014026	MTLKETYINTLVNSMSMEDLQQYVANDMADFLCYVNDTDLLNEFLIKVEHTTDEQFYNKFVTSLKGGTLLV*
Ga0101447_116673	Ga0101447_1166734	F020902	MQDYFDSEFWDLMYSEYGVTDELDILSEQVTQIITPVPGIIVLITREFYGKES*
Ga0101447_117209	Ga0101447_1172092	F010091	MTTMDIDELLYEAENGKRSAILTRITPEAQPFWDGCEERVKNGTPIKPYVVSRLLKEHFNIKISESAVRHHFENIATHG*
Ga0101447_117780	Ga0101447_11778010	F040134	MRKYRAYNIHMIDNIVKSNWKLQSIEYSGLGNKPHFILMNDSGDFKLVPVEIGIYNLRKLLGLEEE*
Ga0101447_118658	Ga0101447_1186581	F000754	MDFTVNNAEFSKNTSVSALVTGEPFGWNGNYVMNDMVTSGQVRNRPIITFTNGTAATRTIDVAVFIGG*
Ga0101447_118658	Ga0101447_1186583	F002192	MHQVLLYSTFFIAILALFFGLYACGRVAKVQTAVKDLDWDAVANMTGDLATTKRTIQTLNNRINGMHSPKLQEQELMLQLLQNQQTKSNGRMQGG*
Ga0101447_119522	Ga0101447_1195221	F015078	MPKTTEQKFTCNVNYQFDISLEDLRDLFCTMGQGSDYWATDITVGNIETEEDEEGVTYVKSGQDYEYQGCCMWLKELTLDSPITVEDIEEDTHKFKVKDVIKAIENIVSGKTNLNTYDCTQVFEAFKDN

Showing 1 to 29 of 29 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007267: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ12 time point

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences