Sample 3300007105

Overview

Basic Information
IMG/M Taxon OID	3300007105 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052586 \| Ga0102630
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 764447348
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	127938743
Sequencing Scaffolds	10
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F073656	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F081354	Metagenome	114	Y
F089053	Metagenome	109	Y
F090484	Metagenome	108	N
F090514	Metagenome	108	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102630_100035	Not Available	143827	Open in IMG/M
Ga0102630_100571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33233	Open in IMG/M
Ga0102630_100812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25140	Open in IMG/M
Ga0102630_101246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	17144	Open in IMG/M
Ga0102630_105198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3891	Open in IMG/M
Ga0102630_108395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2244	Open in IMG/M
Ga0102630_108473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2222	Open in IMG/M
Ga0102630_108834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	2122	Open in IMG/M
Ga0102630_115210	Not Available	1135	Open in IMG/M
Ga0102630_119303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	870	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0102630_100035

Not Available

143827

Open in IMG/M

Ga0102630_100571

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

33233

Open in IMG/M

Ga0102630_100812

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

25140

Open in IMG/M

Ga0102630_101246

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

17144

Open in IMG/M

Ga0102630_105198

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3891

Open in IMG/M

Ga0102630_108395

All Organisms → cellular organisms → Bacteria → Terrabacteria group

2244

Open in IMG/M

Ga0102630_108473

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2222

Open in IMG/M

Ga0102630_108834

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium

2122

Open in IMG/M

Ga0102630_115210

Not Available

1135

Open in IMG/M

Ga0102630_119303

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium

870

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0102630_100035	Ga0102630_100035110	F074964	MITKKNINRLQNVVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ*
Ga0102630_100035	Ga0102630_100035137	F090484	LFFVDSCSSSSVTGFWRLSAKRHKSDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0102630_100035	Ga0102630_100035156	F099406	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLKSLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSESDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRAVTTLVNLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0102630_100571	Ga0102630_10057121	F052660	MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*
Ga0102630_100812	Ga0102630_10081217	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF*
Ga0102630_101246	Ga0102630_10124616	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0102630_105198	Ga0102630_1051984	F089053	MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*
Ga0102630_108395	Ga0102630_1083951	F101355	MISPTTGALSLRAIRPKNLAAINMIARSRKNRYIMIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIAQSQMCLL*
Ga0102630_108473	Ga0102630_1084733	F062845	MKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDALSNTVPSKSCA*
Ga0102630_108834	Ga0102630_1088343	F074899	HRDPHGEMSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKTL*
Ga0102630_115210	Ga0102630_1152102	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGKG*
Ga0102630_119303	Ga0102630_1193031	F081354	KKALDLVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR*

Scaffold ID

Protein ID

Family

Sequence

Ga0102630_100035

Ga0102630_100035110

F074964

MITKKNINRLQNVVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ*

Ga0102630_100035

Ga0102630_100035137

F090484

LFFVDSCSSSSVTGFWRLSAKRHKSDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL*

Ga0102630_100035

Ga0102630_100035156

F099406

MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLKSLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSESDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRAVTTLVNLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*

Ga0102630_100571

Ga0102630_10057121

F052660

MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*

Ga0102630_100812

Ga0102630_10081217

F090514

MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF*

Ga0102630_101246

Ga0102630_10124616

F073656

MEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*

Ga0102630_105198

Ga0102630_1051984

F089053

MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*

Ga0102630_108395

Ga0102630_1083951

F101355

MISPTT*GALSLRAIRPKNLAAINMIARSRKNRYIMIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*QSQMCLL*

Ga0102630_108473

Ga0102630_1084733

F062845

MKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDALSNTVPSKSCA*

Ga0102630_108834

Ga0102630_1088343

F074899

HRDPHGEMSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKTL*

Ga0102630_115210

Ga0102630_1152102

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGKG*

Ga0102630_119303

Ga0102630_1193031

F081354

KKALDLVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007105: Human stool microbial communities from NIH, USA - visit 2, subject 764447348

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences