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Sample 3300007031
3300007031: T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
Overview
Basic Information
IMG/M Taxon OID 3300007031 Open in IMG/M GOLD Reference Gs0117429 | Gp0123960 | Ga0102621 Sample Name T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Sequencing Status Permanent Draft Sequencing Center Shell Corporation Published? N Use Policy Open
Dataset Contents
Total Genome Size 50574477 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii 2 All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Alternative Ecosystem Assignments
Environment Ontology (ENVO) freshwater river biome → river → sediment Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Sediment (non-saline)
Location Information
Location UK (Newcastle upon Tyne) Coordinates Lat. (o ) 54.971158 Long. (o ) -1.703654 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F040697 Metagenome / Metatranscriptome 161 Y F048390 Metagenome / Metatranscriptome 148 Y F054136 Metagenome 140 Y F064746 Metagenome / Metatranscriptome 128 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0102621_101529 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii 3346 Open in IMG/M Ga0102621_101716 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii 3148 Open in IMG/M Ga0102621_103489 All Organisms → cellular organisms → Bacteria 2006 Open in IMG/M Ga0102621_110543 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. 927 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0102621_101529 Ga0102621_1015293 F054136 MIENKAQLLADLAYVGSKVQAKTNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSALRMFGNMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKCV* Ga0102621_101716 Ga0102621_1017163 F040697 LKETVIAMKLIEKLVDDNVMDDILKEAADGYGDLIAEALVHKVSVKSLQTRVVQLRNLRVAWIS* Ga0102621_103489 Ga0102621_1034895 F048390 VRTLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVSPVKKGRYEVALKPTTIELNQSLKEV* Ga0102621_110543 Ga0102621_1105432 F064746 MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKNHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDNTVALIGVETTNDFGMSAWDVINSITVN*
