3300006842: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0025m

Overview

Basic Information

• IMG/M Taxon OID: 3300006842
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114420 | Gp0111520 | Ga0068494
• Sample Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0025m
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114862101
• Sequencing Scaffolds: 76
• Novel Protein Genes: 81
• Associated Families: 45

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	23
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	20
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Cheungvirus → Prochlorococcus virus NATL1A7	1
Not Available	7
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → Eurybiavirus PHM2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → Viruses	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → unclassified Prochlorococcus → Prochlorococcus sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F001026	Metagenome / Metatranscriptome	802	Y
F001918	Metagenome	617	N
F001993	Metagenome / Metatranscriptome	607	Y
F002137	Metagenome / Metatranscriptome	590	Y
F002185	Metagenome / Metatranscriptome	585	Y
F002490	Metagenome / Metatranscriptome	554	Y
F003333	Metagenome / Metatranscriptome	493	Y
F004764	Metagenome / Metatranscriptome	424	Y
F004842	Metagenome / Metatranscriptome	421	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068494_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	20032
Ga0068494_100213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	9090
Ga0068494_101249	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Cheungvirus → Prochlorococcus virus NATL1A7	585
Ga0068494_101707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	8106
Ga0068494_106045	Not Available	724
Ga0068494_107583	All Organisms → cellular organisms → Bacteria	1007
Ga0068494_109062	All Organisms → Viruses → Predicted Viral	1356
Ga0068494_109520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	6940
Ga0068494_109756	All Organisms → Viruses → Predicted Viral	1275
Ga0068494_110019	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → Eurybiavirus PHM2	962

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068494_100028	Ga0068494_10002820	F035799	VFKTINKSITSILLFMISSIKSGFLLFSDQDVDLFQVAALMDMRQLLDMVLGREVG*
Ga0068494_100213	Ga0068494_1002137	F080160	MVTILRYFKKYQILSDNGAIRTDHGFENTSRLSYL*
Ga0068494_101249	Ga0068494_1012491	F018613	MTKLTRYQQELATNLCVLLAEDYQLLNETILEYVELLGNTNRMHDLHEYTCKELENDWGRG*
Ga0068494_101707	Ga0068494_1017076	F031896	MPKAFRRFLKKLPKKIQTKNTHLESFYHPKYEIAVLVNKFLISIIFDKT*
Ga0068494_106045	Ga0068494_1060452	F080486	MNPSKLITIFFIFFVAVSCTPRSLSVAQKNACMAPSANFKALDAIHSTKIHAILWAKKFAKQASSKELSLSDKCRQTQILIKALYGLRDGESATWENPQNNTSGKIKILNTIVQTGIWGYGGCRDYLSYIKIDDKLETFKFRACPKELGAFELVDSAGFPIPGHLYFAGWYFYDYRFFE*
Ga0068494_107583	Ga0068494_1075832	F009079	MKNDQILKWIATFTLIVGTFVNAGFPHLYPIGPMLLALGGIIWLVVSVIWKEPALITTNAVLTITGIGGILLYYLR*
Ga0068494_109062	Ga0068494_1090621	F003333	KKVGDRYNVLRKGKVVFWNVSESELFDIMEDLAVECYYNKTLTSKDITYEPYIEEPLNNG
Ga0068494_109520	Ga0068494_10952011	F032308	VIVIPSYFYRGDVSMKEGATLTVWVPIGAIYNSDDLNLEINLVDVTRVEPINSPILS*
Ga0068494_109756	Ga0068494_1097562	F001918	MKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIHHFEQRMKPKQLVWEKYPKFDMSPYKMVSQMEFPLSDDVVRQSIYRQKCQWTSVKKSLDLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLFMMNGSYQAGAGREYCDWFYCGPHKRVQQFDPLQVFDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIR*
Ga0068494_110019	Ga0068494_1100194	F006794	MTSKAKTLLKVGLPLVIVIQLISITFLLAKMSRDKAFSCKAVGNYFVCKQIKLK
Ga0068494_112608	Ga0068494_1126081	F023135	GTKLAAINPIIIALSAARIMSINIICSKMSDCSIKMLL*
Ga0068494_112640	Ga0068494_1126402	F083232	MGFDPNKPYKANKTDYLNIIAALLLTIIVVIWALS*
Ga0068494_112680	Ga0068494_1126801	F089047	MTIKCASEKWKEIFILNDLSFEKIPESCKSKKDIPIVVAKNVLKYPEQVREFLENGYWWMNRCINSNIRPGKSIDFGFDVKGYFNPLINQFTKFYNADDIEPIEFYGNCYNGNADLYTTM
Ga0068494_112766	Ga0068494_1127663	F001918	MKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIDHFEQRMNPKKLVWEKYPKFDMSPYKMVSQMEFPLSDDVVRQSIYRQKCQWTSVKKSVDLVDDEFDIVIRMRTDLEFHDRVPLEACKANGLYMMNGSYQAGAGREYCDWFYCGSHKRVQQFDPLQVFDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIR*
Ga0068494_112767	Ga0068494_1127671	F059069	MRINQYVVYTSPVKIVSDFSEACKIADDYFNETGYIVAVEETNPVVYPEYEV
Ga0068494_113645	Ga0068494_1136452	F007173	MQTITKAKISRNNLMDYIHEDRDLLMGLQDDLSDMLYATGKFSITLDEIVNEFMPFFPLYLIENEDEIKKTYPDRFDDDHLFIFDRELTPKSINLYVEWLD*
Ga0068494_113804	Ga0068494_1138043	F035799	VFKTINKSITSILLFMICSIKSGFLLFSDQDVDLFQVAALMDMMQLLDMVLGREGG*
Ga0068494_113929	Ga0068494_1139294	F035799	VFKTINKLITSILLFMISSIKSGFLLFSDQDVDLFQVAVLMDMRQLLDMVLGREGG*
Ga0068494_114774	Ga0068494_1147742	F016591	KPFMTDITIIRIATPIMIPKNEKIDIIFKKPSFFLGLKFLKEISLSAFVNNVLCVNF*
Ga0068494_116565	Ga0068494_1165654	F028530	MSFSKLLKQKRKSIQWTALVLEAVGKAKKYQRPITLDVARENSALLLEDALLQLALNGENAAWRVEVKLHTLH*
Ga0068494_120436	Ga0068494_1204361	F001026	MARHLLVLDDMELTALITHLEGQNEIMCESRLNSSNPSETPDREEILLNLVFEKAFTIGWDAHINPKVDFDLHKNEDRIYENKLYPQVYGQTK*
Ga0068494_120436	Ga0068494_1204363	F002137	MKVKELIEALSYYGGDDDITFYFLKNDTLTNCQLEDIGFFSDTMGVEFTIQDTSEVMEEVDV*
Ga0068494_121225	Ga0068494_1212252	F044551	MKPYIAYIIIALFFMTLIRTTLKIDRTERNQRLYDELCQVDASYCKES*
Ga0068494_122731	Ga0068494_1227312	F054941	MTDQENHLKQVLTQQKTLVDEINALNSQITSKREMAVKLQGIAEYLDQLGVKVPTEEEEAPAAEAAPVVVEEAPAKEG*
Ga0068494_122876	Ga0068494_1228761	F060046	KAEPNKDNATSAVTGFVNLLSVLLKLINKIKINKEVTKGIKGIRVVEFMKFPTKIICI*
Ga0068494_123875	Ga0068494_1238751	F078816	LTSKTIYVMEGVYRNKRIENTTFPLIKGYQPYPHKPGGFVTVHIDDMAKYQAP
Ga0068494_126043	Ga0068494_1260433	F001993	MNSEQLRYKMKNLNELLPNRSVTNDDEFYELYSKLRDLIEDTEYNIDIVDLYTALHCAMEDFEMYD*
Ga0068494_129128	Ga0068494_1291282	F031896	MPKAFRRFLKKLPKKIQTKNTHLESFYLPKYEKAVVANKFFISIFLIKHGQQN*
Ga0068494_129471	Ga0068494_1294711	F024413	PVNETINNPSPNPNIDNPKHKKKNVENFGLKLKGFSELHFTFGIFFIFKNIIVISYIY*
Ga0068494_129605	Ga0068494_1296053	F035799	VFKTINKSITSILLFMISFYQGGFLLFIDQDADLFQVAALMDMRQLLDMVLGREGG*
Ga0068494_131003	Ga0068494_1310031	F004842	GNKDATTGVLGTMPDIGAIKKAINEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGESTPVAINIPTHNKPVNSGAIVFLMNKIIDIIKTTTVINASKLLLITAIKFIRNLFNSIYPKTIFQKSLIEIIFFKKPFKNRFFLEYP*
Ga0068494_131983	Ga0068494_1319831	F071322	MITEENKLPEAILVIANPIPRTNNGGISPKLKWANAKIKAETMMPEITPKFLERVGSKIPRNIT
Ga0068494_132909	Ga0068494_1329091	F032308	YSGDVSIKEGATLTVCVPIGAINNSDDLTLEINLVDVTRVEPINSPILS*
Ga0068494_133073	Ga0068494_1330738	F035799	VFKTINKSITSIFFLLFRSIKSGFLLFSDQDADLFQVAALMDMRQLLDMVLGREGG*
Ga0068494_134529	Ga0068494_1345298	F004842	DGDIFLRSHQPSIKGNKDATTGVLGTIPDIGAIKKAIKEINFLGVLILSEEINSLTLSRAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERIPVAINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIRNLFNSIYPKTIFQKSLLEIIFFQKLFKNIFFLEYP*
Ga0068494_135607	Ga0068494_1356076	F080160	MVTNLGYFKKYQILSVKWSYTTDHGFENTSRLSYL*
Ga0068494_135643	Ga0068494_1356433	F035799	VFKTINKSITSVLLFLISSIKSGFLLFSDQDADSFQVAALMDMRQLLDMVLGREGG*
Ga0068494_135819	Ga0068494_1358196	F016979	MGENTAPQEAVMEQNVIYVILFILKEKRNLYVKSPEKFI*
Ga0068494_135889	Ga0068494_13588910	F031896	MPKAFRRFFKKLPKKIQTLKTHLESFYHPKYEIAVLVNKFLISIIFNKT*
Ga0068494_136789	Ga0068494_1367893	F004842	TSRFTELPNNVRVPPSKVAKERGNKTFDGDIFLRAHQLSIKGNKDATTGVLGTIPDIGAIKKAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAINIPTHNKPVNSGAIVFLINKIIDIIKTITVINASKLLLTNAIKFIRNLFNSIYPKTIFQKSLIGIIFFKKFFKNRFFLKYP*
Ga0068494_136790	Ga0068494_1367903	F035799	VFKTINKSITSVLLFMICFIKSGFLLFLDQDADLFQVAALMDMRQLLNMDLGREVG*
Ga0068494_136896	Ga0068494_1368963	F016534	VKDFELDFPQFAGCFPRPNPHWIRNGSIFLKKQDFNIIVDFFLRSIQFPYLKKKFFKNILIT*
Ga0068494_136960	Ga0068494_1369601	F080161	SAKSFLLEAFKPADIPAKRNPLGVTLLSSTNDQLESNWLKLFGILIHTNYSLILKKLSN*
Ga0068494_137528	Ga0068494_1375282	F033071	VYDNFFINLAVHTSLLKNLQFKKAKILCFKIYTPLALFKNIRIEVSGGFITNML*
Ga0068494_137828	Ga0068494_1378281	F040682	LLKESNNEKIVAPIIRNLKPKLNINAAIALMKRNIPRNPKILGVFSNSSKKDI*
Ga0068494_137976	Ga0068494_1379766	F035799	VFKTINKSITSVLLFMISSIKSGFLLFLDQDADLFQVAALMDMRQLLDMVLGREGG*
Ga0068494_139310	Ga0068494_1393104	F016534	VKDFELDFPQFAGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLGSIQFPYLKKKFFKNQLIT*
Ga0068494_139311	Ga0068494_1393113	F016534	VKDFELDFPQFAGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSIQFPYLEKKFFKNPYIT*
Ga0068494_139670	Ga0068494_1396702	F080160	MVTNKSYFKKYQILSVNLSYTTDHGFENTSRLSYL*
Ga0068494_140755	Ga0068494_1407555	F031896	MDFLIMPKAFRRFLKKLPKKIQTKNTHLESFYHPKYEIAVLVNKFLISIIFNKT*
Ga0068494_141599	Ga0068494_1415993	F041824	IDRSTNQAIGRGLEQVQELHYGKHGFQWKVIRIL*
Ga0068494_142645	Ga0068494_1426452	F002185	MVKGKLERKYKLIHNGRELSKGLLSEAGKYDAMQILVQKFDEGRPDAIDPDEVEIIDVTKEK*
Ga0068494_145424	Ga0068494_1454243	F035799	VFKTINKSITSILLFMISFIKSGSLLFLDQDADLFQVAALMDMRQLLDMVLGREGG*
Ga0068494_145491	Ga0068494_1454912	F039178	MGIFVKWVRPPAQLKYGLIAALQIMLLMIRIENYSFHFSDAKRLNHDPPLIYGS
Ga0068494_145653	Ga0068494_1456531	F016534	VKDFELDFPQFVGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSVQFPYLKKKFFKNPLIT*
Ga0068494_146965	Ga0068494_1469654	F016534	LKDFELDFPQFTGCFPRPNPHWIRTASIFQKKQDFNIIVDFSLRSNQFPYLKMKFFKNRLIT*
Ga0068494_147733	Ga0068494_1477332	F040682	MVAPIIRNLKPKLNIKAAMVQINRNIPKNPKILGVFSNSSKKDI*
Ga0068494_147794	Ga0068494_1477941	F035799	VFKTINKSITSILLFMISSIKNGFLLFSDQDVDLFQVAALMDMRQLLDMVLGREGG*
Ga0068494_149266	Ga0068494_1492663	F035799	VFKTINKLITSILLFMISSIKSGFLLFLDQDVDLFQVAALMGMRQLLDMVLGREGG*
Ga0068494_150115	Ga0068494_1501151	F004764	DS*MLPI*FGGGVMNYTNFGLEKNVEILSAHHVERFIYLRDNEQYQDADAIAQEYVCKGEVEDDNYQWLYVNYQFKEAN*
Ga0068494_151054	Ga0068494_1510545	F097482	LFSSQNYISYNRVNLANYAHACFDKAMAEIISKAINTNLLLQLIMNEL
Ga0068494_152778	Ga0068494_1527784	F016979	MAENTVQQEAVMEQNVIYVALLIPKEKRNLYVKNLKKFI*
Ga0068494_152783	Ga0068494_1527838	F080160	MLTNLRYFKKYQILSVKEVIRTDHGFENTSKLSYL*
Ga0068494_153050	Ga0068494_1530504	F000802	KQISLKIMTIDEYKDLLLEDEINIGYDVEEDDLPDQYDDESYIDGLLTTGFHAVDASEMFGEEVVGYSLY*
Ga0068494_153051	Ga0068494_1530513	F035799	VFKTINKSITSILLFMSRFIKSGFLLFLDQDADLFQVAALMDMRQLLDTVLGREGG*
Ga0068494_153111	Ga0068494_1531115	F006794	MTSKAKTILKVGLPLVIVIQLISITFLLAKMSKDKVISCKAVGNYFVCKQIQLK*
Ga0068494_154257	Ga0068494_1542571	F004842	VKVPPSKVAKERGNKTFDGDIFLRSHQLSIKGNKDATTGVLGTIPDIGAIKKAIKEINFLGVRILSEEINSLTLSKAPLLNNAEETANKPISVIKEGLPNPAKAFSGERTPVDINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLPTTAIKFIRNLFNSIYPKTIFQKSLIGIKHLF*
Ga0068494_154622	Ga0068494_1546223	F016534	LKDFELDFPQFTGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSIQFPYLKKKFFKNLLIT*
Ga0068494_154689	Ga0068494_1546894	F035799	VFKTINKSITSILLFMICFTKSGFLLFLDQDADLFQVAALMDMRQLLDMVLGRADG*
Ga0068494_154718	Ga0068494_1547184	F057433	ASTGICKIGNGLNHPQNKHPPSQLPDTPSSNELTINHLFFPFRFRINAPKRITKVKQRALIGSNLTQGAWINIGKITKKEDHNLKEIGLDKKVLSYESTFLCNS*
Ga0068494_154959	Ga0068494_1549593	F000802	MYFDPKMTLEEYEDFKLHDEINIGYDVEDDDLPEEIEEDSWIDGLLTSGFHAINDDELFGEEITGYSLY*
Ga0068494_155904	Ga0068494_1559043	F016534	MNILNINSLKYFELDFPQFASCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSIQFPYLKEKFFKNLLIT*
Ga0068494_156399	Ga0068494_1563992	F013776	MKEFSFEVTKTGWIHVEADSVEDAEARLQESFGNYYVITETGEELSNGWETTGEVEEDPECAFNDYEEEVE*
Ga0068494_156436	Ga0068494_1564361	F002490	MEMSEVKAHIKDYVRDHYKYYGWYPYDVEVGDVLYTYEQYMDILSMTV*
Ga0068494_157431	Ga0068494_1574311	F087327	SCRCLVGLPSPSSINFHGPDIFGSEFFTKKVEAFSSHKIFGELKSVLFSALTDCF*
Ga0068494_157471	Ga0068494_1574711	F080161	PADIPAKRNPLGVTLLSSTNDQLESNWLKLFGILIHTNYSLILKKLSN*
Ga0068494_158203	Ga0068494_1582033	F045154	VREKNKDLQNNICHRVAPSKDFTINPPKLKLRAPKKINKGPGKLFKIVIKFVKLNFEFLSHTI*
Ga0068494_158357	Ga0068494_1583574	F035799	VFKTINKSITSILLFMISSIKSGFLLFSDQDVDLFQVAALMDMRQLLDMVHGREGG*
Ga0068494_158385	Ga0068494_1583851	F043449	NNVKKVRRDTKNFEILSRALYLPRINIIPETIRIPIDKSMDGKAEKKGILVRRTPETKLTAAIVKVPVIRLTIRNKGRYKEFRSLKPSNNDLPVDAVNLVPTNKNGYFKRLVRRIRPTNENPNLAPAVVDDNK*EPPIAAPASKIPGPKLFCIPFVKFMYLIK*FNLIFEPF*
Ga0068494_160415	Ga0068494_1604153	F032310	MKNIFNIMSATSFAGVVFLISMTVYANMTRPARIDENREYIKSVIEKQVYQSIQLTMPPVTGKVNVGNKPD*
Ga0068494_161240	Ga0068494_1612402	F004842	KGNKEATTGVLGTIPDIGAIKKAIKEINFLGVLILSEEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVTINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIQNLFNSIYPKTIFQKSLIEIIIFFKKLLKNRFFLEYP*