3300006834: Combined Assembly of Gp0125094, Gp0125095, Gp0125096

Overview

Basic Information

• IMG/M Taxon OID: 3300006834
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125094 | Ga0101936
• Sample Name: Combined Assembly of Gp0125094, Gp0125095, Gp0125096
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79450630
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050029	Metagenome / Metatranscriptome	146	Y
F053881	Metagenome / Metatranscriptome	140	N
F064746	Metagenome / Metatranscriptome	128	N
F073228	Metagenome / Metatranscriptome	120	N
F090409	Metagenome	108	Y
F102132	Metagenome	102	Y
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101936_102508	All Organisms → cellular organisms → Bacteria → Proteobacteria	3393
Ga0101936_111678	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1252
Ga0101936_112765	Not Available	1177
Ga0101936_129370	Not Available	652
Ga0101936_135211	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	572
Ga0101936_135961	Not Available	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101936_102508	Ga0101936_1025084	F050029	MATIVIHWKDKEIPPMELKAAAYKGADSSIIKITSNGKDYWFNWGECWFLETTSTE*
Ga0101936_111678	Ga0101936_1116781	F064746	MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTAALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDNTVALIGVETTNDFGMSAWDVIDSITVS*
Ga0101936_112765	Ga0101936_1127651	F102132	MAAKKVVRNLEAAINRICEDIKDKKGGSGADKLDSLAKLVNAYSRLIERDNQKKINLEEDGDPMHY
Ga0101936_122395	Ga0101936_1223951	F105254	MAETATIYRIYGNPGQKSSLAGKVGRFCTQDAEPGLNNPCKIPPTGVYDSFRVTDCLGITGDFNQVREIYIHGDGQFADDWDLDSANGGGLFIGHKDTGDSGLPIDVALHGSNQYAVATGTVGTKGDSIEHPTNGHPFYREEGVPVLDFDDCLADSLLLIDSGPYTDDFYSKAWVFCLRTVPTSLY
Ga0101936_129370	Ga0101936_1293702	F090409	MTKEFAGILQTSFGMTDSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0101936_135211	Ga0101936_1352112	F053881	MTGLLKISKESLGEKERKLYSKLYRHIMESFEIDEIAADQISLALVCQKCILLPRLLSGEDVDINQVSESIRKWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN*
Ga0101936_135961	Ga0101936_1359611	F073228	VMVYPHNMEDDKTELARLIKISNNTLTFERKNGEKFALDERDIEHMDLFRSPNYRGGE*