3300006643: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ11 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300006643
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124986 | Ga0101445
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ11 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147985732
• Sequencing Scaffolds: 32
• Novel Protein Genes: 35
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB59	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4
All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula sallentina	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007664	Metagenome / Metatranscriptome	347	Y
F008747	Metagenome / Metatranscriptome	328	Y
F020542	Metagenome / Metatranscriptome	223	N
F025141	Metagenome / Metatranscriptome	203	Y
F029759	Metagenome / Metatranscriptome	187	Y
F031085	Metagenome / Metatranscriptome	183	Y
F038706	Metagenome / Metatranscriptome	165	N
F048250	Metagenome / Metatranscriptome	148	Y
F048330	Metagenome / Metatranscriptome	148	Y
F051099	Metagenome / Metatranscriptome	144	N
F053235	Metagenome / Metatranscriptome	141	Y
F057302	Metagenome	136	N
F057388	Metagenome / Metatranscriptome	136	N
F066128	Metagenome / Metatranscriptome	127	Y
F066836	Metagenome / Metatranscriptome	126	N
F070021	Metagenome / Metatranscriptome	123	N
F071205	Metagenome / Metatranscriptome	122	N
F073447	Metagenome / Metatranscriptome	120	N
F077202	Metagenome	117	N
F079196	Metagenome	116	N
F080081	Metagenome / Metatranscriptome	115	N
F081298	Metagenome / Metatranscriptome	114	N
F085651	Metagenome / Metatranscriptome	111	N
F093745	Metagenome	106	N
F096034	Metagenome / Metatranscriptome	105	Y
F097267	Metagenome / Metatranscriptome	104	Y
F099286	Metagenome / Metatranscriptome	103	N
F099360	Metagenome / Metatranscriptome	103	N
F103886	Metagenome / Metatranscriptome	101	N
F105209	Metagenome / Metatranscriptome	100	N
F105232	Metagenome / Metatranscriptome	100	N
F105238	Metagenome / Metatranscriptome	100	N
F105868	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101445_100027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	25777
Ga0101445_100304	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	2663
Ga0101445_101660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6092
Ga0101445_101901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	10466
Ga0101445_103466	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Marinimicrobia bacterium SCGC AAA298-D23	5320
Ga0101445_104753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB59	3852
Ga0101445_104793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	10461
Ga0101445_106100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	4177
Ga0101445_106720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5676
Ga0101445_107439	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	4875
Ga0101445_108840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3940
Ga0101445_110658	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula sallentina	5416
Ga0101445_112515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3614
Ga0101445_113720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum	2288
Ga0101445_114106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10016
Ga0101445_115078	Not Available	2167
Ga0101445_115175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7419
Ga0101445_116172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	9916
Ga0101445_116800	Not Available	7617
Ga0101445_117306	All Organisms → Viruses → Predicted Viral	3754
Ga0101445_118257	All Organisms → cellular organisms → Bacteria → Proteobacteria	3375
Ga0101445_118348	Not Available	2496
Ga0101445_118401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3308
Ga0101445_120507	All Organisms → cellular organisms → Bacteria	3743
Ga0101445_121712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	6705
Ga0101445_121865	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5559
Ga0101445_124152	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3734
Ga0101445_124231	Not Available	2903
Ga0101445_124486	Not Available	3020
Ga0101445_127607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2440
Ga0101445_130410	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2783
Ga0101445_131797	All Organisms → cellular organisms → Bacteria	2635

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101445_100027	Ga0101445_10002726	F093745	MLSISEKLDNSVQTYVHCSLRDRILTLHSHSLDEYSERELELLSKIEASVSKENKKNRILELTWDDFLNNHELLNIEIILNFTNIKIDKKNELTPPNLALLIKKPEEKKLLWEKMQALLNDD*
Ga0101445_100304	Ga0101445_1003042	F025141	MIQCEYCTRGFIETTNGLAEKTFHELLHEPEVVNK*
Ga0101445_101660	Ga0101445_1016605	F081298	MLLNKKSLFIPLVLLICSCNTGYQPIQSKSIFIANDVDVRFAELVHKRFFHEIKTEQKIDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKDNVYVNEFNPIAQNNAVSQISYELMNQLIDEL
Ga0101445_101901	Ga0101445_1019016	F071205	MSFSQKQNIIFYVALTLSVFQLIQYLMSGGIFLTLLAGLVPFWLWSTRKKRLANVDMGSFDQVLSYVVVVYAAFAGLIAVLVFVFWLMYASIDPALIESALADNPAINDLNEEELEALDQVMDNLPSLLPVLWLFLGLQSFSYLYYGIGVIRKASN*
Ga0101445_103465	Ga0101445_1034657	F057388	MYLQXSSGTYFGVSKNIGFLFMNSPLNFGFQFSERGGSSINLNDYLLDGNSSVENSTLDVLMRHSYFDVFVNANISIGNVSFYLGPMVGINLSSQVSDLDSIVLPAIYDFKPSDLDAKQFDMGMNYGLTFHVNRFIGLSLETYQGLPDKNEQQFTNYGLKLSIGL*
Ga0101445_103466	Ga0101445_1034667	F057388	MIKRFLIMCLIGFTLVNAQEKRSLNVFAGHQQLSIGSSSDFSSGTYFGVSKNIGFLFMNSPLNFGFQFSERGGENSIDLNEYLVDGNSSIDDNTLDVIMRHSYFDFFVNANFSLGNTSIYFGPMVGFNITSDSGLQDVVLPAIYDLDSSEFDAKQFDWGMNYGITFHVNRFVGISLESYQGMSEEKNNRFKNYGLKLSVGI*
Ga0101445_104753	Ga0101445_1047536	F048250	MKTLLAILLIIPSLSWGLGENIKNNKDAIKEKIQDKVEVARSNNNNSSVSSANKELIHQIKNNFTSLEDLEETLTSAVKAQGKDALFQDIQTTLVEKVIVAENLYKNLNEDDLKEITNLLISLRVLDKTSYHSLFDETPQIKPVIRIACATVRWYFGVCSIPR*
Ga0101445_104793	Ga0101445_1047938	F103886	MADISIIEFAVYAFIAYSGMLMLIISTIREAPQTKSQSFTRAMYLIPSIVCAFLLAGMGESVGLYEVVSSGVEQGTSTSLTDTYTINLVNPIWITVNFMFGVLMTFHFIMQTLQLLLFRD
Ga0101445_105782	Ga0101445_1057822	F105209	MEKNREGYTELQFQPWDPNISIGRSQNELIKTIYIGIIEGLSDTLSSPDSMDSMLKGLKRVQSMLLALSLPNFALSDEMIQKKLGLFYAYCQHQVQTGIESQDCSHLHELPEHFEQLVNTIELCPINSPLQVH*
Ga0101445_106100	Ga0101445_1061004	F073447	MKYFARHKKKCLVVLCNLIVASVLISFSGCIAGADYENKMICVYRTTGPKVLEQFKVTRSKKEISPPQATETPDEILFRIIDTEIKRSGQLVYASVSYTIIHAEADKLKKLFPELRIAVVHPPFSEWARSWISSGPWRYEGSDGLRVEHLDENCCPEEYKTMKKEDFDKIVSDFFAGQYDILLCSGSYYNINRLYKRDSPIGKPAVMEKLPIRMKSGVKGKKWKLMEGVWRARSTYVPYDYQWGEFAVEPADPKAVQIIENLYGEK*
Ga0101445_106720	Ga0101445_1067204	F007664	MRLLFLSLLFCLSLGAQDRAIHWQKPDSYASYAPFSTHYFRGDLAQTHLTSINYGWAELGFFMNSYREPTFALCYKTEIFERGRWRAHLMAGTAYGYKKNLYNYPTIPLSSTFLFRTDFVPVGGGTVEYFVSEKLAIKATFIPLVGGLGLQYSL*
Ga0101445_107439	Ga0101445_1074396	F085651	SSLFSKKLEATYLGEQFVVINNWFSGLKIYHNGDLVGQSNQLVVRNKYEPFTSVTVVGKKDKLLVEIYGYSSLFSFKFHIKINGDFVAGDKF*
Ga0101445_108840	Ga0101445_1088402	F048330	KLLDFSRCFFVDNSFEISNIRLTPKDLIDTHHTMILILKE*
Ga0101445_110658	Ga0101445_1106582	F053235	MKTSTKLLLSGAVIISLSLIVFGTDAVLSLITFYQNLESPSAREMAEGISDSIGSALFGVAVGFLGVCVFILGFISIFFEKRSPIDGDASRRRRFSEY*
Ga0101445_112515	Ga0101445_1125152	F080081	MLSNDIIDQLVSISSKLDNMIVPKDNITEEKISHLKNIIIALSDRHSELSKTDLQILISQLQAALIDLDEATNNRIEMLDFVNNIAPK*
Ga0101445_112515	Ga0101445_1125155	F051099	MFCFSSLGAAAASTVEFQEKTITGSTPITAQLSTETFSTRALENALHKLVIDSTHKIKSFSLVEDGQLLIDQIQSQTNIRIFEYQILNQRKNGDQYEIDVKFLYAYIEQNVAPNSCRKVPTQDIPTSISLNSQKNNLIPWASLRPATIQENFLKLNFSPSIKVMSAEKNNQKSDQLYRLKRSNISDDVYDLRIDVNYEPLVNRNILGKTSALKVSVNVQTNRYGETILSHTYASEFIVDYKTLNNISVSKSRRNWKQTESEIYSFLTKSLESHLEHLECINISPKINIVNKEISLNFGSAEGIGPNDLIVAKDKTGKDVFLKIKTLGQHSAALSLVSNLKDYASLRASSVHILSGI*
Ga0101445_113720	Ga0101445_1137202	F097267	MLAVKADYLRRICMKKLAAAMKIPMKMNCAVKTVALPARFALNKTIVIYCQRNQHV*
Ga0101445_114106	Ga0101445_1141067	F077202	MNKYFLIVIKFALAVCTLGNQVNANNFDLRSSTFIGVAPITADLDDATYSSRAFNDAVRQLMSQVGVNIESFTLIENGKVLFDQIQSQSNITVHEYQIDEERRDDKAYKVKVSFLYGAGIQKVSTSRCLKIPANKIETNISVRSDTNALPWAHLSENEISDQLSNLSFSPNVRILRNPNDRGKTNGLYTLSKKQDKKEKYSINVRINYEQISEKGILSNSHLMLLSVDIKSHRLNQLLLNDVREHEFLIDRKEIGNISFSKSRSDWDQTKEAIYRYIASVVLQHVDTLECLKISPNLELSKGRIKLNFGSEEGVKSNDLILTQDKVGQQIFLKVIQLNKHDTFLMPLSTVEDLSSINLKNVAILNGS*
Ga0101445_115078	Ga0101445_1150784	F029759	LMVFGWALYAHARVRANEKTLEALDWETLANLTGEVGAMKRSLQKVNNRINGMTASDPVQLLQELPKLQTQQQSNGRIGG*
Ga0101445_115175	Ga0101445_11517515	F066128	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIFIQ*
Ga0101445_116172	Ga0101445_1161721	F103886	AYSGMLMLIISTIREAPQTKSQSFTRAMYLIPSIVCAFLLAGMGESVGLYEVVSSGIEQGTATSLNQVFTINLVNPIWITVNFMFGIIMTFHFIMQTLQLLLFRE*
Ga0101445_116800	Ga0101445_1168003	F057302	MKIDGLTQKEIVAAQYGALSRLGDERTYAQNLVYDKVRREHLANVHMEGLESVYACRPFTEHSKKLMRDKAVSFMANVYGVEL*
Ga0101445_117306	Ga0101445_1173061	F031085	MNTKVKLRNPVAKHDHNKGGPHRDRKKYEKKYQSRGKRLTKPLEREIL*
Ga0101445_118257	Ga0101445_1182578	F070021	MKKKWIFVIIIWALIGFIIHNQFDPNTVIGSVLGSAFIFFWIAVLIVGIFIKQKRQKKK*
Ga0101445_118348	Ga0101445_1183483	F008747	VALEVTAVGVPLIAPVEESSERPAGKDGETDQPVIVPPFAVGVTVVICVPLVKVNEFVL*
Ga0101445_118401	Ga0101445_1184014	F099360	TTPCSKQNDMRTSRSQYVLEECLVIALGAVLGLFWGLDQAMAWVLGGLILLGALTTQRAWSERKPDRVGQSVIAKWLVIALAFSAVFSGWNAVPLALLILGALAVNLASPISAVIVAMNRRRY*
Ga0101445_120507	Ga0101445_1205072	F038706	FSILAGSQYPMAKLKIITLLILLCAPSMHANANETNFNSNIEPRRHTYSMPNLRDVFLSGGMVKQLPIAEKHNVEPRTSVNVDVEKISYALDNKGMRDIKDCDIYLSDQKFNFVNDEMYQKLLAHIDTLSTEKHSSSVPSKESCFELLHFIF*
Ga0101445_121712	Ga0101445_12171210	F105232	MLLFPFSIMVLRRVIVLVSSGLRLVMLAMAIGSRFHRNISGHIVAAS*
Ga0101445_121865	Ga0101445_1218653	F096034	MNRTTLNRAYGDFFGSEHWDYFSTLTYKHPKSVKRNRDEMNKLTKYLKKQAIAFSMVWVCEWHRSGTSTHSHLLTKGVDVAVIDKYWSKSNLGYKKFNDHKVYERDKGANFYMAKYLDKEVDYDIFGL*
Ga0101445_124152	Ga0101445_1241523	F020542	MRPILFLLALLILWSCERPDDFRSNDPRDVVGSNATTPRLQIAPFPNLDSYWIYVGSYWWGKHEHHRITDSIWYQKDTAISIQEDITGVASTHTYKLLRVLRRDVVDWVGQRDPKGALHSPESQVMLYPRNQFVRIDDQGRWISLRIWISPTGLQKWEQVLMDIDIPIGTPWVEDYRVTETDTVIIDDRWAVRVSLREPYRTSGVDWIEGIGPTQNSLLPGYDGWQTTYFLKKHFIY*
Ga0101445_124231	Ga0101445_1242313	F105868	MDFQKLERRFQLMLPSAPILLLFLIFAPWHQFGSGSWGMSQSAIEAPNALLGVIALLSVVISMLISFAQVLGSDKLPESPKGKSWEEVVFLVSAVMLGALLLKLILETSFLGWGAWACIIAAAIHFYGSYIGRQSGSTSRNP*
Ga0101445_124486	Ga0101445_1244864	F105238	SIVSTIFFMHFATGAWSAVAIQCSPNLEVSWSFDQIENKSDFFETTDNLSSITLHLDTGFLKLPSAQNDGIILLRQQSIIKKSPDGLDLTVKYESTNTTGIEKTNVILSDPMCKKSKDAVVSIFTAEEFRYINTIYNCDCVSPTHDIENFINN*
Ga0101445_127607	Ga0101445_1276075	F079196	MQFANRVVSFLSNKKRALVLLAISLFGFYVFLQSSLGPNNFLRADSGTYHVDFGGVALMAVYIISFSAYASYKTLINFGYLLLIFSLPIAILKTFTEMVSLLATMDGNALEMTSTISEFYTIFLVGCFLSACGYFIDERQKFYETKTLSNLDVFVLFLSLISFNIINIYTVILRSGLEISFGAFWSAPAWLGVLSSLSIALALYVIFDRKSKDWKFSEYPQQVFSNSKLLLDSVMSVVLMSAIFGAIAFYYTSQSPIESGSVTTEIGFLSMFYAVNIFILSMLSALRVERNFLELDFTKRNWHIIEAFAFLTFMSLAPPTMWDRFSTYFNQAPDEIIELEERINALEEQLR*
Ga0101445_130410	Ga0101445_1304105	F099286	MAFKTLEMKMNLIIFSVLCLLFVNCSQKKSCKYIDDRNQLLIPVVLKKFDDDVQKVFQNASLEVTVNAQLVNVQLDSIQKNHYTANLISNYSNQSMSQYSSAFLEIYCDSIARISSKPVSRFEFEELYNK*
Ga0101445_131797	Ga0101445_1317974	F066836	MADCKHSWMCQGRILALDTILDDWLGPTLALLHCEECDHPALLHLVTWRGNGLAERIYAIRLVDRRTRNTYLTNINRDYCDMTRKASETEALISACSQKARLVLVTGPEMIVESFSMDLFNPSVMNWKDVKTESYESWMKFLSR*