3300006624: Soil microbial communities from the Leymus chinensis steppe, China - after adding 1.75 g N m- 2, yr-1

Overview

Basic Information

• IMG/M Taxon OID: 3300006624
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117801 | Gp0125019 | Ga0101567
• Sample Name: Soil microbial communities from the Leymus chinensis steppe, China - after adding 1.75 g N m- 2, yr-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Chengdu Institute of Biology, Chinese Academy of Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226052258
• Sequencing Scaffolds: 55
• Novel Protein Genes: 57
• Associated Families: 57

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria	7
Not Available	15
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora tulbaghiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Br18	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter antarcticus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: the Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
• Coordinates
  • Lat. (^o): 43.63
  • Long. (^o): 116.7
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F000336	Metagenome / Metatranscriptome	1274	Y
F000338	Metagenome / Metatranscriptome	1271	Y
F000411	Metagenome / Metatranscriptome	1170	Y
F000938	Metagenome	827	Y
F001333	Metagenome / Metatranscriptome	720	Y
F002569	Metagenome / Metatranscriptome	547	Y
F004019	Metagenome / Metatranscriptome	457	Y
F006194	Metagenome / Metatranscriptome	379	Y
F008445	Metagenome / Metatranscriptome	333	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101567_10039246	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	853
Ga0101567_10066738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533
Ga0101567_10079873	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	567
Ga0101567_10092873	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564
Ga0101567_10108396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726
Ga0101567_10127470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	520
Ga0101567_10187101	All Organisms → cellular organisms → Bacteria	559
Ga0101567_10217409	Not Available	514
Ga0101567_10230981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508
Ga0101567_10257580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101567_10039246	Ga0101567_100392462	F028362	FSDTEAKVDNLGAGPTILGHPTAHYRVATGMTMKISAMGQEQTVKIGSTTDTYYATDIKGDLNPFASVSGGDMANMFGTTNKDFATKLKAVQAKLPKGTPLRAVSASTLVSQGQTKVTNSHAEVTAIQWVPADPKAFEVPSTYTAAPLPGMGGSGGGTPPR*
Ga0101567_10066738	Ga0101567_100667381	F026650	DSSWPYSFMNVCKLLDLCPEVVRAELLADASLGPFHYWIRRAGRLSRKLGSSVARVLEGCRNPEAVEGNQLAASI*
Ga0101567_10079873	Ga0101567_100798731	F011116	MSHIDDCIPGQRAKILRSGVARVTGKTGTIVEVSRIRRPPSAPLKDEVTVDVPGHGEVAVAPGDLEIVQS*
Ga0101567_10092873	Ga0101567_100928731	F006194	MTRRPAGTGPGKESKGKGSAGKPSQQRLARNARSKAHITLAKALAAVFSAGFYTKDDLQSAVCTFVAEMKQGGESGEGVVKAAQGLVNEVGARFPSSERTQVLLADMVTWCLAEYYRESA
Ga0101567_10108396	Ga0101567_101083961	F062955	RMERWRTELEELEQTLERRERDLVSYVDQLQGAMSGVSDDAWWSRPAGGDGGVLS*
Ga0101567_10127470	Ga0101567_101274701	F090845	AIVLDTALSQDLIAAREVTSAEDPRLIERLTLEDEESSVGTLLLGRRSDGNRYNRQELEAIREIIPSLAEALRVARGRYSRENMMQQRLDEMAARLAQLEGGEPKPA*
Ga0101567_10138339	Ga0101567_101383391	F068259	QAAAVGFRVAETKVDASTKVTAAPIRRGAGQDVALMVVGVGAMIAGALIGETAGTIIIIGGAGMALYGLYNYLE*
Ga0101567_10187101	Ga0101567_101871012	F000338	MASVRFTDVQARPTEFLDLTSLTLAEFQQLVPPFEAAYHAHLAAWRLDGKPRTA
Ga0101567_10217409	Ga0101567_102174091	F042552	MHEQREHLLEELRKAQQALTLLKELEPLLTESKGRELEGHVRALKQLAQSLPEGHIVRLVLESALEPSNVGTVSRARSAIEGEISTLQG
Ga0101567_10230981	Ga0101567_102309811	F075217	MATLPAEGRWSLRLLSEDDVRDALQFLQRDPLINVYLISRLIEERTLASTQLVVVRYNGAIVLVASLATNIVLAGDPSMP
Ga0101567_10257580	Ga0101567_102575801	F027649	PEPAAAKTEEVSMAYGLDPRLFLENGPANQAAAAHARSSSDSYRAWAGLDAEHRFELVERALHNAANDRIGMPIAL*
Ga0101567_10264485	Ga0101567_102644851	F004019	MNDPTATAEQPQEPLPHVDLGMSIGIASTIAIVSAIMVGAATYEVVRGTLSAGMTRLLAVVALLSVVAMAYGLIELALAVIATTAERRRQARTVSERRSGSRARKPTPH*
Ga0101567_10284204	Ga0101567_102842041	F019413	LPPHELPREMTLERTEHTKQWLASLAVPSGIRSTAFGVFGGLTGHDRARCAIAFEDLVKAAAGQLDEASRAELNALVQELAGSTPSGHARQTATQFPPS*
Ga0101567_10328061	Ga0101567_103280611	F024164	MHEQGIPQVTNAELIADLKAILQELRPRLDNYAEMAGETVAADEGFYLAAQLQATLRDASEHAARIRAQLATGFGL*
Ga0101567_10332094	Ga0101567_103320941	F074163	MEVLVVIVIAVLVLGVAIGPLLAMRNPAEADKLTPGADPASRSGKEPDASESTAESPTPRHTEDQP*
Ga0101567_10333276	Ga0101567_103332762	F013962	PRLRLFRVADQMRAVSLPSGAHGEANLVMPSYKTLRAKFCGQNETGTEAQGLAAGYVRDAAGNPVANAHVWATWQVLWVQQNGRLVSTNQQRTVETDTGGDGSYLMCGFSRGTEITGKVGMAGRATIAESLVIPASLVLEHDFRFGAR*
Ga0101567_10373855	Ga0101567_103738552	F049606	MTEIPTSAPGPPPRRRWHTVGFLAVCLLVFLLVAGGLYFLGPRSAPPGVTMADLHGVADLQTRFNTDRGQARLVVILA
Ga0101567_10390933	Ga0101567_103909331	F077256	DPVGQFDFTLARIVHEAGGKITVAEAYRRFSHPAGRHCRRLTIETFLQMLRSVECTVVEIKNPEVPVVSLRSSNGGVLFRNVPGQNGKSLTPPKSPSNLAAIQFFGTKNSFCERHAVRRR
Ga0101567_10500399	Ga0101567_105003992	F045990	IFGRLWEEAENGAHNDVHRTNGTTRRPARDSRSTPGPVRITDSEPITEG*
Ga0101567_10534842	Ga0101567_105348422	F008776	VNYGIADCRKRLRNQRSSLRAKHHPPTGGSNGELHPGSGRVGSYAEVLANVSMSQSSLSRLVECLLEPANPTTAQEESMEREEAVIT*
Ga0101567_10538139	Ga0101567_105381391	F031472	VQGQPDTGVITGHAVGTADKMRLDVKMKGTSAQVSPLASDSTVSMIVTDTGKTIAYLDSRKNQYLRVRPADMIAQAQQMGGMKMEFTDTKAQVDSLGAGPVILGHPTTHYRIATGMTMTISAMGQQQTAKVSSTNDTYYATDIKGTLNPFASMTGGDMANMFGTTNKDFADKMKAASAKLPKGVPLRATSSNTLTAQGQTRVTNSQAEVTSLKWVDADPKAFEIPASYTAVQLPTIGGAGSGAIPPK*
Ga0101567_10574440	Ga0101567_105744402	F062729	MRLLSIALCAIQFFLLGATMMIAQESSYDENALRVESRLGDLQIVRGTSSTVVARAGIFRGPKVASLVSSSDSALAEAKVFEHNYNPGIYMVSAGIALFGAAIGVGRISDLNNGIPSGLLASSVLLIAFGGSKLESAYRGLSKAI
Ga0101567_10602607	Ga0101567_106026071	F030072	VKNIDWPLAILLAVVFVVMSVVRWRYFQSRARRRSQRPPRPRE*
Ga0101567_10651601	Ga0101567_106516011	F025498	MKKKKIETHKIGLVGQAPSQRGDPRKPLAGPNGQKIARLAGLNYDELIACRRRHLNTHYNGKHGKGYAFDHAKGKVKAADILLDWRVERIVLLGKNVARCFGFRD
Ga0101567_10654174	Ga0101567_106541741	F017159	VSVRLADTLLGEMVKLPLRAGVVDRSVWPIAAPLARVAELLRVDLADVTDAAERVAPYITADGRQLWSVKLIERAIDPNAPAWLRRRSGAPPKTPPTLAG*
Ga0101567_10662307	Ga0101567_106623072	F054827	LPPCVRHPRTPERRGVMRRVLAVALVALAAVALYATTAPAGEQAVTPKQFSALQKRVKALEGNEKQIVEAIQLIAHCSLDRGAIPTTKTPQYHVTATGESTDFYVLTTNDADCVDFINSPALQQLLKRAH*
Ga0101567_10670999	Ga0101567_106709991	F089124	PYEPLWAESLRREASPKPEPAAKTKPASFQARTALAIVALVGFGVLLSVIVSDDSSRVTFAKLPSYWGSVEMTCATVRREEDDRTLEVFRCNARGAGQLPPGDYRPPETNWNSDFDRRRATDHAIRISPTGVVRGWALYVP*
Ga0101567_10674584	Ga0101567_106745841	F054123	MNILHAITLAAILHGTPASPAVTCHKGTVSYKFVGTPGSTFSYAGAKYSVPKSGWIELLAEREDKGYLAATGRTLPLDVWPIDAFGTRTVPLQDTAAPQTHVDTEPIRTINN*
Ga0101567_10677270	Ga0101567_106772701	F001333	SKRKLLAIVCAVGISAVLLAGYGYIRKYHAQKILAENTPPPAVEKKAPLAHVVVDEPTLEKGMTTIGGVVKNISKQDLSNLSVVIELRRRKDSGVEENLLPVTPAQLQPDQEGSYSLKVSALDYASIRLAGLKADPQSSLIAYSSSQGKKRTPERLEPKTIVVKRAGKPGEFINSPDNPVRVP*
Ga0101567_10698969	Ga0101567_106989691	F103184	ASNSGTPIATTCIHARSERHEPGCSQFGERKRPDPYADESTIVRRKRGVTIGAYQGLTIATLTCLVGALFFLGVDSKAQKGVALVALIVAAVFIVTMARRKSRSVESDRTKMLVLVWLIGTALCWVAMAVVLFLPPNLLWELGPIYATAIGATGVLMTAAGSLTLSSIYGRDWASRKGRTS*
Ga0101567_10711877	Ga0101567_107118772	F048553	MMMRFTVEERHLTDQEGRPIGGTDTVAFHTWDAETIDDAVRLYVKHDEAEIIGNVLKFPGFQAVATIRKAGGVYTLQFTPSSQKLEI*
Ga0101567_10723252	Ga0101567_107232521	F015992	MTTPTPLPASETYSTELLPRDTFRTVIAIAIVLLTIGGWIYVVMDPVNRSALPAQTRLWWIEQLTTLVLALVCIGIALRKRSLLGLAFWLTIYSLIFKVMRWYFEFRAGEYLVPIALILYALFIWRLHLARRSVAGEGQVVAV*
Ga0101567_10761699	Ga0101567_107616991	F045989	PEVRGIAGVKVGNAATVIAVFDREPGAYEGSRVREALGNHYEDRNLHFVAAVAASYEDLVRAWFKQVDGSPGRLISVQSFDNDSMLRIGVDQALRSAEERARGLSVGTQPDREALRRLVPHERVEFVAADATG*
Ga0101567_10805405	Ga0101567_108054052	F091980	MRPYERPTLTLAGSFKKLTGLGGTGPKDAVTKKQSM*
Ga0101567_10806350	Ga0101567_108063501	F022194	TIVQKAGRPLPFAYSLGIDASYRFALRDRLGQVRWQLVPPTIFNSYRVGDYFNDADLVPPRRYSKDEKEVAPICPHETIPIRVPRFQPIPLEPRAVRR*
Ga0101567_10815349	Ga0101567_108153491	F020436	NYFRQELVGPHILTAATGRSVLFVNDEHDFFRLYFFTSDLGELEQILGGAKFPGSVVVGYITKAADEDVAAALQHSGFSPIATYRRMLSYQLPLQGPNSDLEYAIRGDIDQIHDSLFRAFNKYTDHLPTKDRLLRYIENQWVIVNRQDGRVCGAVCFQLEGPRVNYNYIYNLSRNPIDFLRLQNNFYGVMHQRGIHAGFLWINQT
Ga0101567_10838657	Ga0101567_108386572	F059924	MHPTKYRDLVELLILLDEVESRSRELAKRFPELRAVAEAISDATGLCDLAMRLEETES*
Ga0101567_10849059	Ga0101567_108490591	F000336	SSGKISRKKSPLDSALDQVTDESVAASKKEFQDLLAQAKGDTSELIRQNAQELEERLVLLKKRKIDKEDFDFFVENQKRDLRVFVDSQPAEAQERAEKLTLRILEIAARVAIALI*
Ga0101567_10890077	Ga0101567_108900771	F039751	VRLRTVWGNLWRFESSREHSFGLLPSTLSESESYQQPPLPLVLLDYLRPEAFRRAAQRAFINCESLLRPAAVSPPFFAEGAAFVPPDFLLAAQRAFISSDSFLRPAAVSAPFFLAGAGFVPPFSLAQRALAAAESLARVEGEK*
Ga0101567_10970226	Ga0101567_109702261	F060873	MPTIKLPEESQHNDMVKKVDAMIREISKAPNMTASTRALGLRPSLLIGEHQELAHIMAKRGLLNLQNHMIGLAVAAARSAPYELYTHTRSLQLDYGLDGGQIVELAATVAHVTSINVFETAIAAFNDNPPMCPQEPSSPVLVEVRQKLGSVPRYFLYMATDP
Ga0101567_10992609	Ga0101567_109926091	F021799	CRRPLRVPSNRPIVAVHGSHVPWGKVVVKGVPVVPGRRLPSMLRGLPAVLGSERVASLADQARVRFHAAA*
Ga0101567_11019284	Ga0101567_110192841	F088832	LPPGASLGTDVLPQALFDGTVFTGQAPFGFTFSCEDKGGLNPPTGKLAIELAYSDLGTSPLLGAPFTIHGIVDTIDPVLESAICIGQNPPPDGSTLIFLGRYRLTSPAPAGFPSTCPTRETEATPLCRFEVIVRDNDGNPGPSAGDFFSIKLSSATAVTSELPDVFYARAGIPEGGNIT
Ga0101567_11028279	Ga0101567_110282791	F000265	MPELRGKQATEDVKDEWKRAYQFYLAAPGVPHNKKLDRTERINYVAEKMHLTRKQAKRRVKNFEAWQRNIKKGLITP*
Ga0101567_11046818	Ga0101567_110468182	F060315	MGDSDTLGLGTMTGEHEKPEIESTNTKLHGEPPPGSPLPGAEREEPSEVKGEVNPNTE*
Ga0101567_11055581	Ga0101567_110555811	F002569	MKVLAQANSILSLQFPLAKRRTPKYSLVRPSTVRPRTSVPSTLDFMRVNNATVREGRAHRVWPPDVLRKFQTAEIITDLQTPHYVLRDSSITRITN*
Ga0101567_11108421	Ga0101567_111084211	F011111	MNVELAVAGLGWFVLAFGHTTIGLRWVLPNLTKERLPSTPVGPPSMTLGMVRFTWHIVSILLVGFGILLMALARAPDADPKTLLLRWFAALWLAATALACWNARRRPSSLLRLSVPLVFVVIAVLCWTAST*
Ga0101567_11122429	Ga0101567_111224292	F016525	ARLLGEALAGESPAALQRLALEDQRQAEEGLVALTRNGKTYYKLLEDLEEEDMAARIAADRLREAWLKERRDRWIDYGGRPRGEGRL*
Ga0101567_11168082	Ga0101567_111680822	F021852	MTAFEDRIRRMAREAMGELGRDESEIADVIEPPGADYCVITFTDPVHKPIEVSKPLGAGDSQEQDEIRRALQYRFGT*
Ga0101567_11175326	Ga0101567_111753261	F054388	PLSILVGGEIWDLYVYGVTRVASDWWVQIAVVGPRCFTATVRVDTAQGRGPAARQIINLISGWLRKDEASDHVFLEAPALEARAS*
Ga0101567_11257168	Ga0101567_112571681	F016085	INLRRFAISLATFAVVALGSAVVANADSVIINVPNAGLSGSPGPYATVNYVLNGSNIDVTVTMFPGFAAFGTGDANNGIFGFNVVGSVAGLNITGLPAGWAFNPAGGQMDGFGNFDVTLSCCNPANAVASFSFTISRTGGFSSASDIFEANSTGTHFAIHIAPTNGNPTGFAG
Ga0101567_11364524	Ga0101567_113645242	F000411	MFLLLGTAFFFQATLVRGELSTGTTHSISFVDLDGNKLSTADGHVTIVVLTTSADREQARTVGDHAPDFCLGNPAYRMITVIHFTRRHMALGRRMATGFIRHRVREEAKRLQARYDAQKISRDAKSDIFVVTDFDGTIASQLGQSAGATDFCVFVFGQAGELLAQW
Ga0101567_11399407	Ga0101567_113994071	F059048	VLGLGAAAAAYAARRHADDVEPSVREFTEFRDAISRQVAGVQTDTRTTRRHLDRQPVGRPTSATASQAPRRDEQRS*
Ga0101567_11431868	Ga0101567_114318681	F087143	DAVDIRTEIIGPYAIAGSVSYLADIQRWEPRMTISRVDGSARDFVVPCGPECYRKNSEEAMMVGWATARQWLDGGRIPWHARGG*
Ga0101567_11483819	Ga0101567_114838192	F008445	VSGVSNADFLVAFLLAAAAGTAVFFHAERNRIRHPSAWASFVFLFLIAGLPSYALHVRRVRRSRR*
Ga0101567_11506410	Ga0101567_115064102	F067870	MNLHNANLDHESRRAGIRRTVWIVGALALAILVLFFLKQGIWH*
Ga0101567_11618542	Ga0101567_116185422	F000938	MARRTTWLIDMGDGTWSVSCMACRIALYRGSKADAERAARGHYCEPVVPLGRRRRSA*
Ga0101567_11665716	Ga0101567_116657162	F093805	ANTAKDAGKGKAATITGQGEAEMVPGKNGEMVPVQKPVNMTFTVTAKERYLWTLELKRRGLTAVSVLRKTMQEMMGEADR*