3300006611: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300006611
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107627 | Ga0101553
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 193269043
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.92274
  • Long. (^o): -129.988104
  • Alt. (m): N/A
  • Depth (m): 1522

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005684	Metagenome / Metatranscriptome	393	Y
F018078	Metagenome / Metatranscriptome	237	Y
F033215	Metagenome / Metatranscriptome	178	Y
F062154	Metagenome / Metatranscriptome	131	N
F072444	Metagenome	121	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101553_1096766	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	555
Ga0101553_1122450	Not Available	864
Ga0101553_1163001	All Organisms → cellular organisms → Archaea → Euryarchaeota	1152
Ga0101553_1173004	Not Available	500
Ga0101553_1293231	Not Available	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101553_1096766	Ga0101553_10967661	F062154	VGANGVKVLSVVNARPEQPVNSVANGVKVLSVVNARPEQPVNSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVDRSPGAVVVGEDQVVLCGCSL*
Ga0101553_1122450	Ga0101553_11224503	F018078	QSILKFEKFLVWQLHNRTEIVIAIVAFVIGAILF*
Ga0101553_1163001	Ga0101553_11630013	F005684	VYDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRM
Ga0101553_1173004	Ga0101553_11730041	F033215	PPVEERVPAVALIPPLRDKSASPVSIFSPAASRVTGCAMLSLDILSSSVKAKLANSSVPTDREALSSIVEFAAKRRVVELSGSTPLKSTPSTSRILLLLSDRAFAFVVNVVPFVFRVAPVSDKAFSSTNVVPGIEILVPDGALAPETRVIVPPEEFSDALSVNANA
Ga0101553_1293231	Ga0101553_12932313	F072444	MPERENNAFWEIAELIEREMSILRKMRPVGPKEKALLKKMMDDKKKEYEKRTNSPKITRFGSSLT*