3300006597: Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_03_SludgeMetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006597
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0119689 | Ga0079070
• Sample Name: Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_03_SludgeMetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 172088008
• Sequencing Scaffolds: 41
• Novel Protein Genes: 44
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus sulfaticallidus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium 49_20	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium cochlearium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin101	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.1191
  • Long. (^o): -88.1952
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F022205	Metatranscriptome	215	Y
F029768	Metagenome / Metatranscriptome	187	N
F030134	Metagenome / Metatranscriptome	186	Y
F034940	Metagenome / Metatranscriptome	173	Y
F036251	Metagenome / Metatranscriptome	170	Y
F042353	Metagenome / Metatranscriptome	158	Y
F045124	Metagenome / Metatranscriptome	153	Y
F047076	Metagenome / Metatranscriptome	150	N
F047387	Metagenome / Metatranscriptome	150	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079070_1000550	Not Available	534
Ga0079070_1001030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	649
Ga0079070_1001327	Not Available	1730
Ga0079070_1002911	Not Available	848
Ga0079070_1004002	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	711
Ga0079070_1004980	Not Available	2113
Ga0079070_1007225	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	904
Ga0079070_1011980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1701
Ga0079070_1025079	Not Available	1020
Ga0079070_1025394	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus sulfaticallidus	3095

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079070_1000550	Ga0079070_10005501	F022205	SSSPWRMHDADRHTRVRIRREGHRPGSPCKLRTMRNRSNKRFLLPYNKFLNAEGSISKLTAGEFGFPLTRPMRPHALEVRFARSSPGGVRFRVYAGNNEEVYQSPALVAGAAPQVFRVTLPANTDFSLYDNAQNVMEFGGSATYAIRLIMAHKENTA*
Ga0079070_1001030	Ga0079070_10010302	F056642	FNTMYKLINSYAQSENQIKQGKYVPPEITVLELTLEKGFAASSDSVTEDWESSEW*
Ga0079070_1001327	Ga0079070_10013271	F054902	MRIKIQKKWYNVKSTWAELTIADAQKLAEHEPPEDYLKYLKNEVDGLSPDIEMQVLAWVGEILPIISDMPTEVIESLMPTDRWVILKSLMHIVSGVYLQIPYDLPYDMPPAIILAEGKLYHVPTVRRVYNKDIYFSVVGFKTFSELLEL*
Ga0079070_1002911	Ga0079070_10029111	F070165	ASLMSCKTAKSLGRFQEPIARLSTDFRESADPGNSKRIMGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV*
Ga0079070_1004002	Ga0079070_10040021	F064746	IMAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDNTVALIGVETTNDFGMSAWDVINSITVN*
Ga0079070_1004980	Ga0079070_10049805	F045124	VTDDGALRAMIYETRQDVRWIKDTLKEIKEANQAQDERINEIKARQDSQTGRDGALAAIVSMVVAFFTALASGGWFR*
Ga0079070_1007225	Ga0079070_10072252	F103319	MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVN
Ga0079070_1011980	Ga0079070_10119803	F067770	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTEKNKKANK*
Ga0079070_1025079	Ga0079070_10250792	F062800	RRQRKKGKGAKKNGKGSQLQAISSGAITRPFPATFRVRQTYSNGETFTSSTKVIRGLSEFLAKPPMYYNYLYGIYKYCRVLAVELEVLWNSTGSDSMRVAIGRVPYSDISGITYSLFAEMPESQIALLSAKGGMDKVIQTKTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLGSTAHATIRVHYHLEWFDLQYAV*
Ga0079070_1025394	Ga0079070_10253945	F080199	MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIVSQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL*
Ga0079070_1026493	Ga0079070_10264932	F077342	MARTLNEFIVSTGNYVYEITDAKMAGVDLTDSNVAVLLHCVLANEQERDFIVFSKESIEQVFDISTQYLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESKNSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLP
Ga0079070_1026631	Ga0079070_10266311	F097412	MSIYEEMNEDATSGGMFWKPQPGKINKVRILRDPIRREADQKINRPQYQFVVTGDDPKTPLVWGVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA*
Ga0079070_1029964	Ga0079070_10299641	F068879	MHNRSVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPPGVTVFANARIN
Ga0079070_1033524	Ga0079070_10335241	F070158	AQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNGEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIR
Ga0079070_1042362	Ga0079070_10423623	F084407	MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFKGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQ
Ga0079070_1043437	Ga0079070_10434371	F070165	LTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV*
Ga0079070_1057413	Ga0079070_10574131	F092294	NLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFEDIANDTLPPKFHKVGSVSAVHLTESGEKALKGAIAFSDPAIEAKAAAGELSLSTGLASPEAPDPRLPGATKIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQEPEEMD
Ga0079070_1059960	Ga0079070_10599601	F047076	RSTMTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLRKLDIVKIDSVKDTSRDDVYWEVRHRKLLIYDSNRELITNETVGNHKLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMILGVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF*
Ga0079070_1197228	Ga0079070_11972281	F077368	QINDTDVIEVGYYHNLIDYQNDAKDLFTQMNSLSSDYSQYRDIYANFKIVGVQISIIPAYVYTATASDNAMGVFASRQGVYEATPITQSVSTVVQYPGTKGIHNYRKSAHSISINNGDWFTNTETNTQVSRVPKITYYCAWYKVATTNTAQSIVQVRVRLRAKCKLI*
Ga0079070_1221813	Ga0079070_12218132	F029768	KETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNSILQETESKIEQAMKEIAQEQEK*
Ga0079070_1268920	Ga0079070_12689202	F047387	MAAEIASEVLTDEEYADAEHRRFLKEKDKYTDFDEFCRKEGF*
Ga0079070_1273870	Ga0079070_12738701	F036251	AKERQTVLFADTGVVEPIDSTERTALTHGVIFVAQRIEIRRSNKYSEYVIFDGEDLEGKAFHGYTTSSVILQQAKALLERYGGENGALSHDVLCAVKAVVSETTGRRFYTLA*
Ga0079070_1292142	Ga0079070_12921422	F053314	MRTARSTVVVQDNVVVREWRNGVAVRTFQVHNTWGTAGLNMIRDWFAGLSRVPVTHIAWLDAGGVERARDIVTQRVLPGDGSLLIRQYLPSATSANGYTLTTVRAYNAQSGGTQFAEAVFDAIGIAKTANNQITVEWTHTFADGGE*
Ga0079070_1303284	Ga0079070_13032841	F078879	KRRHNIRCKENMTPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEEMEKL*
Ga0079070_1308027	Ga0079070_13080271	F082734	EEEANKRGIPYSYWKDLHYSKELAESVPFYVLSDDGIVVPIHSIAFIRSGIVLKSAFGYYHLPYSNAQYYNSRAKMLVLAENRSQTEDYISHKYTKGALLDGAVVRMAANGLDIGEIVNILCVSPKSQRAQKIKKFYKSEECTKMVREEVKKILESCGITEQTVIEMLLDAMKVAKEKRDAANMLRAAENFVDMYGMKDKDRQIDTRTFELESESEDLAKLEKVSNRLKLSQQKKEN*
Ga0079070_1316730	Ga0079070_13167301	F103495	MDNLLQFLIDSGLLYMIISTLLTVGIGFFVGKGVSFKEIQDIISAIDESYKDGYISPDEARKIYEEIEDVIGHDWYIRLFNIIKR*
Ga0079070_1330069	Ga0079070_13300692	F070166	MNLNDYVVHIRQGTKRITLQRFLVSKIAYEKDFSQIELAALFHNQLWLQTKCQTDKHFKEKFGKSLEELTKILKECNFSRGLQPGAIKSVRTKVLALEWDFLFPQRNLPNLEAQLRNSIYTKWRKPQGVELSKLPPKKHIGRGYRDHGTAPSPELDGSPSWQEVGSEFSNLEREDTEIMLYLLKIVSGEENVTKETVPRLRRAIEVKEAIKRIDPNWRNPLVAEAAEGLVSKK*
Ga0079070_1331775	Ga0079070_13317751	F103499	AMEGCVCETCDTKGCHRPATWEIECRGAGVSGRLIYACDEHAPDEAILSPQDEIRRCA*
Ga0079070_1331775	Ga0079070_13317752	F034940	MGNDCWYYRAQYAGMTKVCMRKSTVERGRIVRFGLCAIPPDSEAWRRCGFAIGQHEIPARYE
Ga0079070_1334207	Ga0079070_13342073	F101222	MNVWVAIAINIVVYLVSFAYAWGKLNTKISDIEKRYYELEEKMSDIMECTIQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGE
Ga0079070_1336355	Ga0079070_13363551	F062800	GAIARPMPAKFRVRMTFQNSEIFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV*
Ga0079070_1341391	Ga0079070_13413911	F103196	GRRTAAGWLCFDGEPDALFYLFHVWIRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA*
Ga0079070_1348084	Ga0079070_13480842	F091988	QNFTPAGEKIQLGISSAQASQDTLTLTLTMSGVDYEEKVSNYRVTGFEKLVCNPYIVAKEPVSVMFQSYEVKPGDPTQVVYTYSLKGNATSELNLTMDWTIGPCAPAFDESNVKAPRNPLLTNYRFEFVVPVK*
Ga0079070_1348584	Ga0079070_13485844	F103495	MDNLLQFLIDSGLLYMIFSTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYI
Ga0079070_1355453	Ga0079070_13554532	F056712	VGILEGLEKSLVRRLMKSSGKQPFLLVFLILFLSMNKKGKKKIEPEKDENYWRVIGGL*
Ga0079070_1355574	Ga0079070_13555741	F052619	LGNQVMKVPVYRPVYKFSRVIEERYDIITDGINPSLSAFVFTLDTLPDYTDFTRLFDMYRITKVEIDWVPEYTELTDAALVSNAVNVRFNSTVDLTNVLAPTSVNEVLQYQQLLSSGITKPHKRVWQPTFLMGGSVPCSCWLPTSAPSERHYGQKQYKLSW*
Ga0079070_1357218	Ga0079070_13572181	F042353	METRTPPTTLPGDACRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLDVSAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELDDLVRVWHPEPDTV
Ga0079070_1357890	Ga0079070_13578901	F056642	LINSYAQSENQIKQEIYISPEITVLEITLEKGFATSSASGTEDWGSLTW*
Ga0079070_1362804	Ga0079070_13628041	F030134	KDKIQPVLQRFKLRSCNLLIVEQTNFLGFYILKDKIIQHRGSNHIYR*
Ga0079070_1369736	Ga0079070_13697361	F070166	MNIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKPQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTYKEIISRIKRTIQVREAIKRIDPNWRNTQVAEASGGKVIPKKVG
Ga0079070_1369784	Ga0079070_13697842	F076128	MIIEIIVLLFFLAASLFLAYQFRSCGHQMGILQGSNASLSADLEKTREENAKLMSELQKTQADLALTRGELEKTRAALNSCTDAINGGS*
Ga0079070_1371784	Ga0079070_13717842	F048337	MIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRITEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLMPTLL*
Ga0079070_1372989	Ga0079070_13729893	F004383	LHAGRYPEGAREYAREWVGMTDILERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLRIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYERSEGSE*
Ga0079070_1376898	Ga0079070_13768983	F055749	NPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPALDEGSEWNTTTNTDLPSGASMWTQLGPLLVLAVLALVIGLVIMYFRNAAG*