3300006585: Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gly_03_SludgeMetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006585
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0119701 | Ga0079082
• Sample Name: Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gly_03_SludgeMetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91900172
• Sequencing Scaffolds: 34
• Novel Protein Genes: 42
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
Methanogenium → Methanogenium cariaci	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin041	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.1191
  • Long. (^o): -88.1952
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015738	Metagenome / Metatranscriptome	252	Y
F017318	Metagenome / Metatranscriptome	241	Y
F017851	Metagenome / Metatranscriptome	238	Y
F020363	Metagenome / Metatranscriptome	224	Y
F020914	Metagenome / Metatranscriptome	221	N
F022205	Metatranscriptome	215	Y
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F035785	Metagenome / Metatranscriptome	171	Y
F045124	Metagenome / Metatranscriptome	153	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079082_1002167	Not Available	805
Ga0079082_1002893	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1033
Ga0079082_1003617	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	657
Ga0079082_1004113	Not Available	641
Ga0079082_1005379	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	585
Ga0079082_1007671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	795
Ga0079082_1011137	Not Available	3985
Ga0079082_1013636	All Organisms → cellular organisms → Bacteria	1817
Ga0079082_1013804	Not Available	861
Ga0079082_1013835	All Organisms → cellular organisms → Archaea → Euryarchaeota	2953

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079082_1001934	Ga0079082_10019342	F020914	MAIYQKYGFAIDQILSEDQELPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTY
Ga0079082_1002167	Ga0079082_10021671	F059033	MATTTSNLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGANTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTANKQMNIFKWIFSAYFTLIIPSAKSVAVITQIDGSHLPT
Ga0079082_1002893	Ga0079082_10028932	F017851	MTPTLSRQFFETFPPEVARGILEGDRLRIHAAKVSVVREAGTTGFAIDTLPRDGRPAEWEKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0079082_1003617	Ga0079082_10036171	F082739	MRKLLCILLVISAAIIGISAAEIQKDFRYTNVNFTPIDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTASNFTVTDIFGPQFNIHPAKLCGGVDIIRVDAGGYATDLSGTDQVVSAAVDNDANTVSLEIALDEPMTADEALMIYCKFQTALKKMLPDTNPFVNEATVNGEPANATVEFV*
Ga0079082_1004113	Ga0079082_10041132	F080199	MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL*
Ga0079082_1005379	Ga0079082_10053791	F031111	NQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNFSCYYSQNLPSSQIGKQVKEILKPLNLALIKLCKPKLTFS*
Ga0079082_1007671	Ga0079082_10076711	F068879	TKEEGFMAGATACPGSRRGLPPGVTVFANARINK*
Ga0079082_1011137	Ga0079082_10111377	F035785	MIRIEADKALKMTETEMLDVVFKASENSVIELNVVDPNPQAGDNDGVYLEIVKLDDEESVVRDRWPNLDGDRHLVRTSDIYAIYRALVDQVEEVA*
Ga0079082_1013636	Ga0079082_10136362	F031111	TGMNNQVLFSIFKNKTRRKKEKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL*
Ga0079082_1013804	Ga0079082_10138041	F062800	KGAKKNGKGSQLQAISSGAITRPFPATFRVRQTYSNGETFTSSTKVIRGLSEFLAKPPMYYNYLYGIYKYCRVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSLFAEMPESQIALLSAKGGMDKVIQTKTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLGSTAHATIRVHYHLEWFDLQYAV*
Ga0079082_1013835	Ga0079082_10138353	F094051	MGNTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGLMKES*
Ga0079082_1013835	Ga0079082_10138355	F072475	MSESFASRFMSPDEKTAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLALLNRVMKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP*
Ga0079082_1015862	Ga0079082_10158622	F047076	MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQNAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITNETVRNHNLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMILGVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF*
Ga0079082_1015862	Ga0079082_10158625	F077342	MARTLNEFIVSTGNYVYEITDAKMAGVDLTDSNVAVLLHCVLANEQERDFIVFSKESIEQVFDISTQYLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESKNSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPRTSVVD
Ga0079082_1018365	Ga0079082_10183652	F017318	VSRRASQNKSPNTIKNPELNQVIKFVRTVEGAFDITTTGLVSNFGVFNFSLNDLPGYTELTALFDLYKIEAIEIEWTPEYTELTDAAPVSNAVNVYFNSAIDPAGNTPASVDDVLQYRTLHSSSITKHHKRRFVPAYLADGVLPVSSYISCASPSTNL
Ga0079082_1019194	Ga0079082_10191941	F068879	IGAPWRDNRVTKEEGFVAGATACPGCRRGLPPGVTVFANARIN*
Ga0079082_1021402	Ga0079082_10214021	F020363	VARVFALVVRSRVMQLVVYSRVGKNRDTRRGSPAGAGAGRTANHLNVLFSQKILAVRKANDIYRPVSTRYFLSCSLNSISKVSLCLVYL
Ga0079082_1022330	Ga0079082_10223301	F070165	MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPT
Ga0079082_1023466	Ga0079082_10234663	F020914	MAIYQKYGFAIDQILSEDQALPNAQPGDSTNIIELQTIADDGLHIVVCAASTTVELASNATLEIRPTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADEHADKVEAFSVRR*
Ga0079082_1024468	Ga0079082_10244681	F097599	KANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELDAEKAKTAELVNLKQEIATLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGATGGSGDAESTEEQKFANMAAEVAKATGIQFV*
Ga0079082_1068293	Ga0079082_10682931	F056712	SETAAGLVGILEGLEKSLVRRLMKSSGKQPFLIVFLILFLSMNKKGKKKIEPEKDENYWRVIGGL*
Ga0079082_1097068	Ga0079082_10970681	F088944	RFDFDEGKEKIESLTTEAGKANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPIALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFVLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEELAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFE
Ga0079082_1107135	Ga0079082_11071351	F029768	MLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNSILQETESKIEQAMKEIAQEQEK*
Ga0079082_1123554	Ga0079082_11235541	F062800	EHIFTTLPRRKRNRNKNRGKGAQLQSVTSGAIARPMPAKFRVRMTFQNSEIFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV*
Ga0079082_1130266	Ga0079082_11302661	F103495	MDNLLQFLIDSGLLYMIISTLLTVGIGFIVGKGVSFKEIQDIISAIDESYKDGYISPDEARKIYEEIEDVFGHDWYIRLFNIIKR*
Ga0079082_1145245	Ga0079082_11452452	F085852	MSFTPSEVILGATLPLENGSTITFSVAGHVEAERDYDDAVVIFGRKLLKYTNSATDADRLTVR
Ga0079082_1160243	Ga0079082_11602431	F074914	MKISTLVKKSCAALHRVELLDPQECDREVFKMEIERARAIAYLVKTVSEIIAKNEMEDRIAALE
Ga0079082_1163546	Ga0079082_11635461	F070267	STAVERVEMGSLAGRSFSRAILGRILAEELGFRSTAVERVEMGSLLLEIGRIPAILHEIRRGVTLDEAFVSAWHPLLGLSILRKYDLPGYLEDILLHSHFPFLQRSLSPTAVIDIAELVVAQSFSRHGKLVIESPLPDGAIESTVGSSIRDQFSAIGYGKYVEVRPPPDEQKARRE*
Ga0079082_1165114	Ga0079082_11651141	F049017	MAIAKYSKTCGKNVPGNSRLFFTEAANIGSITVTSNEISAITMNGTPTPVKFQEFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDE
Ga0079082_1165192	Ga0079082_11651922	F081375	IFLKRIKGGAVNDVNYSGVAGDKILTLGVQIGDDDKLLVRATLDGTPKGVEYEIYPSDISGHVVRWRSRNGAVETLEVLATDEEVAVSATQWRKENSIGDMVGERVNTMTFEITDGRIADALVDGWGFEVDDKPASLVERRLITNSRGVEIQRIKLQWKL*
Ga0079082_1178474	Ga0079082_11784741	F070165	RTQRNSKRIMGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV*
Ga0079082_1184306	Ga0079082_11843061	F045124	AQYDDATLLRGGAVTDDGALRAMIYETRQDVRWIKDTLKEIKEANQAQDDRIAEIKARQDKQIGRDGAIAAAISAVVAFFTALASGGWFR*
Ga0079082_1185847	Ga0079082_11858473	F078757	MNRKAKTLPRRMVRPFLDSIRDVSLSTAERELIDALSAVPRRAEAINLYDFGRKIRDEDVETVESAFYAVAKIKNRLPER*
Ga0079082_1187579	Ga0079082_11875791	F092121	MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASRKETAPAREQALGVGGPMPAGETGADKLTNLNRHMDRLLEDASARERSLAELQEFLRAQRSIAA
Ga0079082_1188400	Ga0079082_11884001	F091990	MKIPKFNSNEEAYNWIENQRFADMNQTDFNNISKLASKTPKSDFMKFVLDNNDKIFCFRGRRLHYY*
Ga0079082_1190961	Ga0079082_11909611	F022205	LRIMRNRNKRFLLPYNKFHNATDQTSSITTNVFGFPLSRPLRPHAVEVRYAHSAPVGVRFRIYAGNGEEVYVSPALVAGPAPQVFKASLPANTDFAMYGPSQIVMDFAGTATWAIRLIMAHKENTA*
Ga0079082_1192571	Ga0079082_11925711	F067770	KMIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGVDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLEKIAKLQTEKNKKANK*
Ga0079082_1197117	Ga0079082_11971171	F095527	RISMLILIPALLLTTIPVSILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL*
Ga0079082_1197351	Ga0079082_11973512	F015738	MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCLHFDRPIDHHLVKEDRPACIEERNGCGNCPESTYRVRRGPDR*
Ga0079082_1197456	Ga0079082_11974562	F048337	MIEKQITIEGVMRYDEEQSNETARLQDYRIAAITKDATYVLIDALPYDFIVTNAFYRITEAFDGTINLGTAAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKIEVHVTGFLLMPTLL*
Ga0079082_1200147	Ga0079082_12001473	F070167	MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGKEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSPAGLLKLLGL*
Ga0079082_1201813	Ga0079082_12018132	F051952	MPKNPRQTIAPDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN*