3300006464: Human stool microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Basic Information

• IMG/M Taxon OID: 3300006464
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052503 | Ga0100221
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160400887
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 213490666
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:470	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F047755	Metagenome	149	Y
F068855	Metagenome	124	N
F068941	Metagenome	124	N
F071325	Metagenome	122	N
F073656	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100221_1000065	All Organisms → cellular organisms → Bacteria	141455
Ga0100221_1000522	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	43908
Ga0100221_1000803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	32949
Ga0100221_1001231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23630
Ga0100221_1001612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19174
Ga0100221_1001807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	17379
Ga0100221_1002435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	13212
Ga0100221_1002582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	12480
Ga0100221_1002668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12043
Ga0100221_1003390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	9844

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100221_1000065	Ga0100221_100006556	F013656	MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKVILKANIYDM*
Ga0100221_1000522	Ga0100221_10005229	F073656	MEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0100221_1000803	Ga0100221_100080329	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFAGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0100221_1001231	Ga0100221_100123123	F087334	MANRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYRENHQ*
Ga0100221_1001612	Ga0100221_10016122	F047125	MDVALLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGWWS*
Ga0100221_1001807	Ga0100221_10018073	F068855	MVPTISRCPSSSVPTVEVQGPQAWKALAPQGLQAEKERENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0100221_1002435	Ga0100221_10024354	F087336	MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP*
Ga0100221_1002582	Ga0100221_10025826	F042936	MGRGGGKGRVWKPKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0100221_1002668	Ga0100221_10026688	F032286	VTPVHHRALIFDTRLFAGNAADDTLVTGSTLRFCRLMRLCVKRRNIILNGKRRSLSDSALFHADNRTEQKTVSPFSLALILTFDFAALSERCSCPVDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSEKAPKSQNFHAYGQDRKRAEI*
Ga0100221_1003390	Ga0100221_10033903	F047755	MENEKVKYLIDMINDMDIKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRNTLINFGQGKYFNINFAMAKLMEMETTEQNKVALYLFNTLNMKKVENYVNM*
Ga0100221_1004077	Ga0100221_10040777	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0100221_1004249	Ga0100221_10042495	F090513	MEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI*
Ga0100221_1004678	Ga0100221_10046786	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF*
Ga0100221_1005080	Ga0100221_10050801	F071325	IFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0100221_1005251	Ga0100221_10052512	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIDKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKIRSK*
Ga0100221_1008030	Ga0100221_10080302	F090515	VITCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0100221_1009285	Ga0100221_10092854	F068941	MKNNKGLIIGMIGLIILMIGGTYAYYKWNSTSNINISVGIEGSTVTFNGGSNITGVLIPTSSKEEGIKKDITVIASEEGSTMSLYMDLTTMPSELKEESFVYELYYNDSTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLNG*
Ga0100221_1013041	Ga0100221_10130416	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINQWHKHSTYIRLKLREILEVNLTDITLIDIISLP*
Ga0100221_1014634	Ga0100221_10146342	F029444	MEVSEQLTGFEPEDLMPWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0100221_1023047	Ga0100221_10230473	F013656	MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQK
Ga0100221_1055067	Ga0100221_10550672	F013656	MASNTKKKLKNNIKKIYKEPLKSEMETTVNVMYGENKLSIYTNKVDLQKQLNKLIGEPIKEYKIKRSISGSLWEMSLNDKTKIQKVIVKANIYEL*