3300006434: T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Basic Information

• IMG/M Taxon OID: 3300006434
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0123960 | Ga0100130
• Sample Name: T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40497493
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosalsum → Methanosalsum zhilinae	1
All Organisms → cellular organisms → Archaea	3
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040697	Metagenome / Metatranscriptome	161	Y
F047387	Metagenome / Metatranscriptome	150	Y
F048390	Metagenome / Metatranscriptome	148	Y
F064732	Metagenome / Metatranscriptome	128	Y
F080090	Metagenome / Metatranscriptome	115	Y
F090409	Metagenome	108	Y
F101218	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100130_101852	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2496
Ga0100130_105972	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosalsum → Methanosalsum zhilinae	1196
Ga0100130_105977	All Organisms → cellular organisms → Archaea	1195
Ga0100130_107206	All Organisms → cellular organisms → Archaea	1048
Ga0100130_108241	Not Available	958
Ga0100130_110760	All Organisms → cellular organisms → Archaea	806
Ga0100130_112684	Not Available	726
Ga0100130_119221	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100130_101852	Ga0100130_1018526	F080090	MSEQWSEPLRMDKKLSNADSWREVHEEDQAALRPGLQDISISR
Ga0100130_105972	Ga0100130_1059722	F101218	MSKQGPKPALPRVKEPPPLPSLDELIAESRALGWDDLADSMEKLRHLETPKGQEALERREKRLSRL*
Ga0100130_105977	Ga0100130_1059772	F064732	MEAAAEAALAAAPEKCTMPPAQSAERHVKFPSSPMDPGPYIAAIATRSTSLQDQVHPGDPEDTE*
Ga0100130_107206	Ga0100130_1072063	F040697	VIAMKLIEKLVDDNVMDDILKEAADGYGDLIAAALVHKVSVKSLQTRVTELRDLRAAWIS
Ga0100130_108241	Ga0100130_1082412	F048390	MVRFVRTLQHRVTPQGRDFYALSIPPQVAEALELKDGGQVSICVNPVKKGKFEITLKPASCDNINP*
Ga0100130_110760	Ga0100130_1107601	F101218	ASMSKRTSKPAPPRVQKPPPLPSIAELIAEARELGEDDIADAFEKIRYLESPSGQRAIERRKRGYD*
Ga0100130_112684	Ga0100130_1126841	F090409	MKKEFAGILQTSFGMMGSVHFSLEMPGSLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0100130_119221	Ga0100130_1192212	F047387	MYAIDILTDEEYADAEYRRFLREKDKYVDFDEFCRQEGI*