3300006410: Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 4 day

Overview

Basic Information

• IMG/M Taxon OID: 3300006410
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114880 | Gp0123666 | Ga0099656
• Sample Name: Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 4 day
• Sequencing Status: Permanent Draft
• Sequencing Center: Institut Pasteur, Lille, France
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47577930
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Parodontellaceae → Trieres → Trieres chinensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Auvergne, France
• Coordinates
  • Lat. (^o): 45.49
  • Long. (^o): 2.88
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F068864	Metagenome / Metatranscriptome	124	N
F073578	Metagenome / Metatranscriptome	120	N
F092089	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099656_119324	Not Available	777
Ga0099656_119328	Not Available	801
Ga0099656_119330	Not Available	746
Ga0099656_119333	Not Available	755
Ga0099656_131798	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	569
Ga0099656_132364	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Parodontellaceae → Trieres → Trieres chinensis	3245
Ga0099656_135543	Not Available	1590
Ga0099656_135544	Not Available	1587
Ga0099656_135545	Not Available	1607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099656_119324	Ga0099656_1193241	F073578	EAIAGAMLPQDAKKKYVVGSSKVEYQKKKAAVIMPPQDGNDSSNIVVPAVSSSRADVVAGHVRPGAFEIRGSGFTPQDDSFLHVDTAPTITNNVQDELKQLEPESLFNAVLVDDPEIPSASIFDYEAAEKAYCRRQGWRVLTTFVMIGILGAIIAIVILLKPKPPSPTLSPTSSPTSSPLFDFLVEQSFDNGTALSTPGSAQQLAWNWLELSTLYNSVTNYTLLQFYALAVFNYATGDRLSKILSNTWLKDNEIVSGY
Ga0099656_119328	Ga0099656_1193281	F073578	EAIAGAMLPQDAKKKYVVGSSKVEYQKKKAAVIMPPQDGNDSSNIVVPAVSPSTAAAPPRDVVAAPSQQHVRPGAFVVRGSGFIPQDDSFLHVDTALASTNNVRDDHGQPELTAVLVEIPEIASASIVDHKAEGKAQCRRQVRNTLVATGILVSIIAIFVTWLLLKQRSDPPSTSSPLFNFLAGYSSDNGTALSTIGSSQQLAMSWLQQSTLDNMPRDYTLLQFYALAVFNYATGDLLSNQSWLQDNGIASEYNFCVWKRISCIGG
Ga0099656_119330	Ga0099656_1193301	F073578	EAIAGAMLPQDAKKKYVVGSSKVEYQKKKAAVIMPPQDGNDSSNIVVPAVSPSTAAAPPRDVVAAPSQQHVRPGAFVVRGSGFIPQDDSFLHVDTALASTNNVRDDHGQPELTAVLVEIPEIASASIVDHKAEGKAQCRRQVRNTLVATGILVSIIAIFVTWLLLKQRSDPPSTSSPLFNFLAGYSSDNGTALSTPGSAQQLAWNWLELSTLYNSVTNYTLLQFYALAVFNYATGDRLSKNTWLQDNG
Ga0099656_119333	Ga0099656_1193331	F073578	EAIAGAMLPQDAKKKYVVGSSKVEYQKKKAAVIMPPQDGNDSSNIVVPAVSPSTAAAPPRDVVAAPSQQHVRPGAFVVRGSGFIPQDDSFLHVDTALASTNNVRDDHGQPELTAVLVEIPEIASASIVDHKAEGKAQCRRQVRNTLVATGILVSIIAIFVTWLLLKQRSDPPSTSSPLFNFLAGYSSDNGTALSTIGSSQQLAMSWLEKSTLDNSPRDYTLLQFYALAVFNYATGDTLSKILSDTWLKDNG
Ga0099656_131798	Ga0099656_1317981	F051162	MPLVKIFAKTGMAKAIPLSALQAKLCNIWAVKPNVTKVMLFRCDDWTDDSFQEDCYVDIRAKGTDQRTREVVLDSMKQVQIAFKEHGLIANVRLETYDESRYFHLPPLSTNV*
Ga0099656_132364	Ga0099656_1323642	F068864	MVQVRTPRQQGKTRTKKSLHLLLPISVLFVGFIGFQLFSSAGLLQSFFDLFVTGNKAQQDPLDISTLRAQVKRLEDAIAGTSTSTTPTKTIQTLPTCRSLMNAPNSPVADGSFLTNRDSTPNVWTLRADGSRQLSLPFTCHLHRYTASEARQCLAKRHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPTTEPNVCMEGDWKDFQVYHRDLGGGIDGGTFNGRFQCLCARKEDDQVADPAYVPVENFLYVSDDAGVPDGGKVILSFISERGWGSNPYPVRGWNFTDCAYKGTCRMTEKDNEHLIGRQRAKDFDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLWGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTASPQGKLDFGEEELKTIRDATIKSGCGIFDASHLTKEFYGFPQMHPLPPKQENGKLWNYREWRSVFWDAKHFTPWVYEELNNMFLNVLCNAKN*
Ga0099656_135543	Ga0099656_1355432	F092089	VQLQWRPCLAHKISHISFRIFNRTQSPESFKTMKLLSSIGIVLALSISFAFAGKSTFKKFPGGLSKKNYVPRNIGKRILKGNSKKGSIVKKNKRKGARASTNTAPTIAQSYVNWVVCLHDRTSNKACSPQLGVPKGYYFLDPFVVYSSCSNTTIPVRKCNVAVDPKGEPLTVVIPVAPDVWNDYDDDPKGGICNESRPTGNDPVLLYPKTNVATDFFKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCGDCGGVDAYPTIGYSATDTSRWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEKK*
Ga0099656_135544	Ga0099656_1355441	F092089	VQLQWRPCLAHKISHISFRIFNRTQSPESFKTMKLLSSIGIVLALSISFAFAGKSTFKFPGGLSKKNYVSSNIGKRILKGNSKKGSIMKKSRKKGARASTDSAPTVVQSYMNWAVCLHDRTSNKACSPQVGVPKGYYFLDSFDVSSSCSNTTIPVRKCNVPVDPKGEPLTVVIPVVGDVWIDYDDNPKGGICNESRPTGNDPVLLYPKTNVATDFFKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCGDCGGVDAYPTIGYSATDTSRWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEKK*
Ga0099656_135545	Ga0099656_1355451	F092089	VQLQWRPCLAHKISHISFRIFNRTQSPESFKTMKLLSSIGIVLALSISFAFAGKSTFKKFPGGLSKKNYVSSNIGKRILKGNSKKGSIMKKSRKKGARASTDSAPTVVQSYMNWAVCLHDRTSNKACSPQVGVPKGYYFLDSFDVSSSCSNTTIPVRKCNVPVDPKGEHLTVVIPVAVAFYFSYDNDPKGGICNETRPTGNDLLYVKTNVVNDDFNYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCVDCGGVDQYPTIGYVSTDTSTWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEKK*