3300006408: Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 1 day

Overview

Basic Information

• IMG/M Taxon OID: 3300006408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114880 | Gp0123665 | Ga0099655
• Sample Name: Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 1 day
• Sequencing Status: Permanent Draft
• Sequencing Center: Institut Pasteur, Lille, France
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37070330
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Parodontellaceae → Trieres → Trieres chinensis	1
All Organisms → Viruses → Predicted Viral	2
Not Available	14

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Auvergne, France
• Coordinates
  • Lat. (^o): 45.49
  • Long. (^o): 2.88
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068864	Metagenome / Metatranscriptome	124	N
F073578	Metagenome / Metatranscriptome	120	N
F092089	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099655_124018	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Parodontellaceae → Trieres → Trieres chinensis	2196
Ga0099655_124019	All Organisms → Viruses → Predicted Viral	2196
Ga0099655_124020	All Organisms → Viruses → Predicted Viral	1373
Ga0099655_124683	Not Available	608
Ga0099655_124684	Not Available	563
Ga0099655_124706	Not Available	615
Ga0099655_124707	Not Available	502
Ga0099655_124870	Not Available	854
Ga0099655_124872	Not Available	996
Ga0099655_124875	Not Available	1427
Ga0099655_124876	Not Available	970
Ga0099655_124881	Not Available	944
Ga0099655_124883	Not Available	1394
Ga0099655_124889	Not Available	781
Ga0099655_124891	Not Available	872
Ga0099655_124892	Not Available	1092
Ga0099655_124893	Not Available	996

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099655_124017	Ga0099655_1240171	F068864	DGSFLTNRDSTPNVWTLRADGSRQLNLPFTCHLHRYTASEARQCLSKKHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPSAEPNVCMEGDWKDFQVYHRDLGGGIDGGTFNGRFQCLCARKEDDPYVPVENFLYVSDDVGASEGGKVILSFISELGWGSKPNLVRGWNFTDCAYKGKCRMTKEDNENLIGRQRAKDFDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLRGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTAYPDSKRGFRDEEMKTVRDATIKSGCGIFDASHLTKDFYGLRQMHPQPPKQENGKLWNYREWSSVFWDAYHFTPWVYEELNNMFLNVLCNAKN*
Ga0099655_124018	Ga0099655_1240181	F068864	TLRAQVKRLEDAIAGTSTSTTPTKTIQTLPTCRSLMNAPNSPVADGSFLTNRDSTPNVWTLRADGSRQLNLPFTCHLHRYTASEARQCLSKKHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPTTEPNVCMEGDWKDFQVYHRDLGGGIDGGTFNGRFQCLCARKEDDQVADPAYVPVENFLYVSDDVGVPDGGKVILSFISERGWGSNPYPVRGWNFTDCAYKGTCRMTEEDNEHLIVRQRAEDLDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLWGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTASPHGKRDFGEEELKTIRDATIKSGCGIFDASHLTMAFYGLPQMHPQPPKQENGKLWNYREWRSVFWDAKHFTPWVYEELNNMFLNVLCNAKN*
Ga0099655_124019	Ga0099655_1240191	F068864	TLRAQVKRLEDAIAGTSTSTTPTKTIQTLPTCRSLMNAPNSPVADGSFLTNRDSTPNVWTLRADGSRQLNLPFTCHLHRYTASEARQCLSKKHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPTTEPNVCMEGDWKNFQTYHRDLGGGIDGGTFNGRFQCLCARKEDDQVADPAYVPVENFLYVSDDVGASEGGKVILSFISELGWGSKPNPVRGWNFTDCAYKGTCRMTEKDNEHLIGRQRAKDFDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLRGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTTSPDSKRGFRDEEMKTVRDATIKSGCVIFDASHLTMAFYGLPQMHPQPPKQENGKLWNYREWSSVFWDANHFTPWVYEELNNMFLNVLCNAKN*
Ga0099655_124020	Ga0099655_1240201	F068864	TLRAQVKRLEDAIAGTSTSTTPTKTIQTLPTCRSLMNAPNSPVADGSFLTNRDSTPNVWTLRADGSRQLNLPFTCHLHRYTASEARQCLAKRHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPSAEPNVCMEGDWKDFQVYHRDLGGGIDGGTFNGRFQCLCARKEDDPYVPVENFLYVSDDVGASEGGKVILSFISELGWGSKPNLVRGWNFTDCAYKGKCRMTKEDNENLIGRQRAKDFDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLRGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTASPDSKRGFRDEEMKTVRDATIQSGCGIFDASHLTKDFYGLRQMHPQPPKQENGKLWNYREWSSVFWDAKHFTPWVYEELNNMFLNVLCNAKN
Ga0099655_124683	Ga0099655_1246831	F073578	HNKTASMSSSNNNNKTNDHGASLYAHRFAEEAKEEETEAIASEDLAGAMLPQDAKKKYVVGSSKETPFAEEVKVEDQQKKAAVVVPPQDENDSSNIVVPAVSSSTAAAPPRDVVAAPSQQHVRPGAFVVRGPGFIAQDDSFLHVDTAPTNTNNVQDELVEQLEPESLFKAEIVDDPEIASASIFNQEAIEKAYCQRLGCRVV
Ga0099655_124684	Ga0099655_1246841	F073578	MLPQDAKKKYVVGSSKETPFAEEVKVEDQQKKAAVVVPPQDENDSSNIVVPAVSSSTAAAPPRDVVAAPSQQHVRPGAFVVRGPGFIAQDDSFLHVDTAPTNTNNVQDELVEQLEPESLFKAEIVDDPEIASASIFNQEAIEKAYCQRLGCRVV
Ga0099655_124706	Ga0099655_1247061	F073578	VFSLVARRLFDIVHHKTASMSSSNNNNKKKDHGASLYAHQFAEEAKEEETEAIASEDLAGAMLPQDAKKKYVVGSSKVEYQQKKAAVIMPPQDGKDSSNIFVPAVSSSTADVVAAPSQQHVRPGAFVVRGPGFIAQDDSFLHVATAPAPSADEFQDELKQLEPESLFNAVLVDDPEIPSASIFDQEAAEKAYCRRQGWRVLA
Ga0099655_124707	Ga0099655_1247071	F073578	VFSLVARRLFDIVHHKTASMSSSNNNNKKKDHGASLYAHQFAEEAKEEETEAIASEDLAGAMLPQDAKKKYVVGSSKVEYQQKKAAVIMPPQDGKDSSNIFVPAVSSSTADVVAAPSQQHVRPGAFVVRGPGFIPHDDSFLHVDTAPTSTNNVQDELEQLEPES
Ga0099655_124870	Ga0099655_1248701	F092089	DMKLFSSIGIVLALSVSFAFAGNSTFKFPGRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPKGELVTVIIPVAVDFYRSYDNNAKGGICNMPRPNDLLYVKTDVVTNFNYTQLPYAFVDGSSLSMKYIIEDEPFYLKSCSNKVQCCDDCDVPACVDCGGVDAYPTIGYVAIDTSTWKPGEKHYYQWGYAIEWDCDGCADCSMGRVELTAVEK
Ga0099655_124872	Ga0099655_1248721	F092089	DMKLFSSIGIVLALSVSFAFAGNSTFKFPGRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPMGKTMTVVARLAVYFYDVDDDLEGGKCTETRPTGNELLYLKTNAVTKDFKYTQMPYAFVNGRSLGMEYFVDEEPYYFKSCPNKKQCCDDCDTPVCEDCDGVDAYPGFGYWVTDTSTWKPGEKRLYQWGRAFVQDGESYCFLGRVELTAVEKK*
Ga0099655_124875	Ga0099655_1248751	F092089	MLLVSQEMKLLSSIGILLALSISFAFAGKSTFKKFPGGLDKKNYVPSNIGKRILKGNSRKGSIVKKSKKKGARASTDSAPTVVQSYMNWAVCLHDRTSNKACLPQLGVPKGYYFLDPFVVYSSCSNTTIPVRKCNVPVDPKGEHLTVVIPVAPDVWIDYDDDPKGRICNESRPTGNDPLLLYLKTNVVTEHLKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDEGCDFPSCEDCGGVDAYPIIGYIATDTSRWKPGEKRYYQWGYGIDDDACGCSGCSMGRVELTAVEK
Ga0099655_124876	Ga0099655_1248761	F092089	DMKLFSSIGIVLALSVSFAFAGNSTFKFPGRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPKGELVTVIIPVAVDFYRSYDNNAKGGICNMPRPNDLLYVKTDVVTNFNYTQLPYAFVDGSSLSMKYIIEDEPFYLKSCANKEQCCDYCDDPACEDCKGVDAYPIIGYVATDTSRWKPGEKRFYQWGYGYEVDACVCSGWCDWCIRCSIGRVELTAVDKNK*
Ga0099655_124881	Ga0099655_1248811	F092089	VYHLPLLETPPSRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPKGELVTVIIPVAVDFYRSYDNNAKGGICNMPRPNDLLYVKTDVVTNFNYTQLPYAFVDGSSLSMKYIIEDEPFYLKSCANKEQCCDYCDDPACEDCKGVDAYPIIGYVATDTSRWKPGEKRFYQWGYGYEVDACVCSGWCDWCIRCSIGRVELTAVDKNK*
Ga0099655_124883	Ga0099655_1248831	F092089	VQLQWRPCLAHKICHIKINRTRSPESFKDMKLLSTIGILLALSISFAFAGKSTFKFPGGLSKKNYVSSNIGKRILKGNSKKGSIMKKSRKKGARASTDSAPTVVQSYMNWAVCLHDRTSNKACSPQVGVPKGYYFLDSFDVSSSCSNTTIPVRKCNVPVDPKGEHLTVVIPVAVAFYFSYDNDPKGGICNETRPTGNDLLYVKTNVVNDDFNYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCVDCGGVDQYPTIGYVSTDTSTWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEK
Ga0099655_124889	Ga0099655_1248891	F092089	LSKKNYVPRNIGKRILKGNSKKGSIVKKNKRKGARASTNTEPTIIQSYVNWAVCLHDRTSNKACSPQLGVPKGYYFLDPFVVYSSCSNTTIPVRKCNVPVDPKGEPLTVVIPVVGDVWIDYDDNPKGGICNESRPTGNDPLLLYLKTNVVTEHLKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDEGCDFPSCEDCGGVDAYPIIGYIATDTSRWKPGEKRYYQWGYGIDDDACGCSGCSMGRVELTAVEK
Ga0099655_124891	Ga0099655_1248911	F092089	DMKLFSSIGIVLALSVSFAFAGNSTFKFPGRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPKGEPLTVVIPVAPDVWNDYDDDPKGGICNESRPTGNDPLLLYLKTNVVTEHLKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDEGCDFPSCEDCGGVDAYPIIGYIATDTSRWKPGEKRYYQWGYGIDDDACGCSGCSMGRVELTAVEK
Ga0099655_124892	Ga0099655_1248921	F092089	MSDLSLFVSQDMKLLSTIGILLALSISFAFAGKSTFKFPGGLSKKNYVSSNIGKRILKGNSKKGSIMKKSRKKGARASTDSAPTVVQSYMNWAVCLHDRTSNKACSPQVGVPKGYYFLDSFDVSSSCSNTTIPVRKCNVPVDPKGEHLTVVIPVAVAFYFSYDNDPKGGICNETRPTGNDLLYVKTNVVNDDFNYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCVDCGGVDQYPTIGYVSTDTSTWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEK
Ga0099655_124893	Ga0099655_1248931	F092089	DMKLFSSIGIVLALSVSFAFAGNSTFKFPGRFDKKNSVPSNAGNRILKGNSKKGSIVKKNKKKGGRASTNTEPTIVQSWVNWDVCLHDRTSNKVCSPQDGVPKGYYFLDTFEVSSSCSNIAIPVRKCNVAVDPMGKTMTVVARLAFYFYDFDDDPEGGKCTETRPTGNELLYLKTNAVTKDFKYTQMPYAFVNGRSLGMEYFVDEEPYYFKSCPNKKQCCDDCDTPVCEDCDGVDAYPGFGYWVTDTSTWKPGEKRLYQWGRAFVQDGESYCFLGRVELTAVEKN*