3300006361: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 AAIW_A metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006361
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0119664 | Ga0079055
• Sample Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 AAIW_A metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13486745
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056191	Metagenome / Metatranscriptome	138	Y
F060086	Metagenome / Metatranscriptome	133	Y
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079055_103443	Not Available	1151
Ga0079055_110137	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1421
Ga0079055_111804	Not Available	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079055_100275	Ga0079055_1002751	F103410	PSTFRHVVRRPVFELSLKNPWPKACCSRSLVVKKCRPKGLQSLIASLPGLSHKSPQTRRSTTTCILAQPTPTRPRASPFGALISVPAQHVLRRTPEGTSRTVLTDQIGLPKVSRPPQRRTFLHHPEASLEHASFRLPYYKTAQRLFSNTADHFCQHLRRHARVPDPGPTHRHSDDPKITFLPISLAFDRLARGPHGPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSHSTQKPLGHSTLCRTIRP*
Ga0079055_103443	Ga0079055_1034433	F060086	MIIRTTAGQEDPFELDSSLLLSSGRHGEDSKRQYSIKLLYEHETPLLDDLAD*
Ga0079055_110137	Ga0079055_1101371	F056191	HALTAEMSKTFPSGGSMHARVKLEGIDGRAPQERGACGLI*
Ga0079055_111804	Ga0079055_1118041	F056191	MCNARVRHALTAEMSKTFPSGGSMHARVKLEGIDGRAPQERGACGLI