3300006217: Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA

Overview

Basic Information

• IMG/M Taxon OID: 3300006217
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114764 | Gp0121194 | Ga0081461
• Sample Name: Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas Southwestern Medical Center
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 791632371
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: UT Southwestern Medical Center, Dallas, Texas, USA
• Coordinates
  • Lat. (^o): 32.815891
  • Long. (^o): -96.846336
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F039198	Metagenome	164	Y
F047755	Metagenome	149	Y
F066905	Metagenome	126	Y
F082887	Metagenome / Metatranscriptome	113	Y
F082888	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081461_1019108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6427
Ga0081461_1025145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4857
Ga0081461_1028170	All Organisms → cellular organisms → Bacteria	4338
Ga0081461_1030709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3989
Ga0081461_1067825	All Organisms → cellular organisms → Bacteria	1875
Ga0081461_1109332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1217
Ga0081461_1133258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1019
Ga0081461_1189163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	739

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081461_1019108	Ga0081461_10191085	F013656	MKKEETKKLYKEPNKSETETTINVLYNEKILSIYTNKVDLQRSLNKAIGKATKEYIKGKSIIGSVWEIPLSEKSKITKIILKANIFEM*
Ga0081461_1025145	Ga0081461_10251456	F013656	MGDIMGDKIYKRINKDEIETTINVLYLEEIISIYTNKPDLQRKLNKLLGEPVKEYKIKRSIAGSVWEMPFKDKTRISKMILKANIFEL*
Ga0081461_1028170	Ga0081461_10281704	F082888	MSQIIEVIVENKNYQIEWALSEHFEELEGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCQIDNIFENGYFIVKN*
Ga0081461_1030709	Ga0081461_10307096	F082887	MKKVKKVAKYATNILAIVSALVAGINAVDGITIPYAIQIVKVIAVVNGVIGTFLLGQKAINKEDK*
Ga0081461_1067825	Ga0081461_10678254	F047755	MENEKVKYLIDMINDMDIKDKLRLAICMSQSEWSGLIYNTKENFEKSDYMLKSIDEEYRTTLINFGKYKIVMLAMAKLMEMETTEQNKVALYLFNNIKIL*
Ga0081461_1109332	Ga0081461_11093322	F047755	MDNDKVKYLIDMINDMDIKDKLKLAICMSQSKWSGLIYNTKENFEKFDNMLKSIDEEYRTTLINFGKYKLVMFAMAKLMEMTKEQQNQVALYLFNNVKIEVIV*
Ga0081461_1133258	Ga0081461_11332581	F039198	MQITSNEISNIKYVQIYLTNEELEKQETKEVIEKYKKDKYSVAIFVTGKENYPEILKKIITKQVELNRNVC*
Ga0081461_1189163	Ga0081461_11891631	F066905	MDETRNCGCGCGCGNNNGCLSGLFGGCGDSEILFFIIIFLLLFTNCGC