3300006184: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof - 1398105538117 (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300006184
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095087 | Ga0097680
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof - 1398105538117 (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 348389969
• Sequencing Scaffolds: 28
• Novel Protein Genes: 35
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F011159	Metagenome / Metatranscriptome	294	Y
F011950	Metagenome / Metatranscriptome	285	Y
F015889	Metagenome / Metatranscriptome	251	Y
F017165	Metagenome	242	Y
F033870	Metagenome / Metatranscriptome	176	Y
F042976	Metagenome / Metatranscriptome	157	Y
F055010	Metagenome / Metatranscriptome	139	N
F056741	Metagenome / Metatranscriptome	137	Y
F075082	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0097680_1007760	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	4505
Ga0097680_1014396	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	2967
Ga0097680_1019589	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	2391
Ga0097680_1021519	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2222
Ga0097680_1023097	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2105
Ga0097680_1025732	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1931
Ga0097680_1029835	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1709
Ga0097680_1031519	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	1636
Ga0097680_1038985	All Organisms → Viruses → Predicted Viral	1361
Ga0097680_1039808	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1336

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0097680_1005043	Ga0097680_10050431	F075082	MASSNINRHKQPSQHIIQNFHLVWLDKNINEDDDDFRNSITKLRQVVNTVNTFVDADKCIDFISNIQEETAFMIISGALGQTIVPIIHSKNQISDVYIFCGNKVWHEKWAKEWSKIKGVFTGIQSICEALKQAAHACDHN
Ga0097680_1007760	Ga0097680_10077602	F042976	LLLGGIFAAFDLPKATDRRFVTPLLLFIASVLLTASLVDYASLLSLNSHSSRVMIASVVFSYAALPLAAFVAGRYSALERNALVNNGIHLTTQKYSATNGNGL*
Ga0097680_1011972	Ga0097680_10119722	F092364	LHTKGIGLTINDILRNQIHPIISFTKQSALIQATAGITMIMFLIGFINGILSLITFQNKELRKVGCGLYLLASSVTSLLTITTFTIKFWFTVLIQLHSTIRSSILRIDCAFLGPVLKLCLYLDGWLNACVAIERSVNVSKGVQFDKKRSIHAARWIILILPIFIIGTIVHEPIHHELFEHKIQKYNSMNYSLLIMNTSMENDTAEVEYETEHIVLCVIRYSRSVQIYNTITLFCHLIVPFIANLCSASFIIFGTARRRSTAQTNKKTLKEHVINQMSEHKQLLISPFILLILAMPRLLISLVSGCVDPSDNPWLYLCAYFISFTPSMLVFTVFVIPSELYRKSFKESITRWRQRIRP*
Ga0097680_1014396	Ga0097680_10143965	F103563	MVAIDRVGHVYPSVHLQEMLNLAQNSAPLATPTEYTSTHVNDPVASVMNGEIGQKISPSQFGLANNPSLQFSTPGGGFVQVFGPLKTPGSDKFFHDPNPVVIQKKSKPITYVQKINLAYYKPPAPPAPGPVIIKEVGR*
Ga0097680_1019589	Ga0097680_10195891	F077495	MYSNRNIILLIGLTLATVSSILVQLDLFQNSLSSTSVVTVKADTVDDEQHLVANTDEDNSISNEVDDELEFYRRASLRPVALYQRASLRPFAGKRASLRPFAGKRASLRPFAGKRASLRPVNYMGKRKRRSLMYVDSE*
Ga0097680_1021519	Ga0097680_10215192	F092364	VRGSFTLLITGPHNLTLNRINKKHSSCVVGDQCSLFTKGIGLTINDILRNKIQSNISFRKQSVFVQTAAGLTMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLTITMFTIKFWFVIFIQLHSIVRSSILRTDCVFIGPVLKVCLYLDGWLNACVAIERAVNVSKGVNFDKKKSQRAARWIVLILPIFIISTLIHEPIHHELFEYTTQKYNPININNNSTMNVSMESDTNVGYENEYNVLCVIRYSRSVQTYNTITLFIHLVAPFLVNLFSALFIIFGTARRRSTAKTNKKSFKEHAANQIREHKQLLISPFILLLLAVPRLIMSLISGCVDPSENPWLYLCGYFISFTPPMLVFTVFVLPSELYRKTFKDSITRWREETHQ*
Ga0097680_1023097	Ga0097680_10230971	F094111	MFFRIWIGLFIYQQQYFTIATVSFNQPRFQINATWNSRAITFANQTFVGKYPYGIFVNSNNSIYIPNQQTGQIHIWQNENDLNPTKTISGNFSYPLSLFVTTNGDIYVDNGVNHRVEKWIVENETWISVMNVPSFCSGLFIDIYESLYCSMHNNHRVDK
Ga0097680_1025732	Ga0097680_10257322	F087441	MEPLAVYGRSLIESNTNLSRSLSISILDESGNEIPFETTSSSNPTEFFIPRDPNLQIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSILTNSIQVNQSYFTFMIDNQQKVGHRLLIFGLQQENQNNSEEYEYRVYSSGCYYLNKENEWKSDGLRVSPKTNLSQTHCYSTHLT*
Ga0097680_1029835	Ga0097680_10298352	F087441	MEPLAVYGRSLIETNTNFSRSLSISILDEKGNEIPFKTFSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISVHFEIKANFSYRFVYKFDRQTNFLNSIEVNNQNYFNFMLDNQQTVGHRLLIFGLEEENSNSSEYEYRVYSSGCYYLNKQNQWTSDGLRVGPKTNLSQTHCYSQFI*
Ga0097680_1031519	Ga0097680_10315191	F081546	IFMSNQRFEILSLLVRNVLTTNSKHFQLHGDKQLIVQILPTAPDRAFITSDCYDSSFDLGSITYTDTLQRLLRQGFQIQSSTSGSYILPKPEKSIIKNEPQQVSAQDTYVLQYTLVRTQNVG*
Ga0097680_1033661	Ga0097680_10336612	F092364	MVMFVIGFINGICSFITFRNKELRKVGCVLYLLASSITSLLTITMFTVKFWFVVFIQLHSIISSSILQTDCAFIGPVLKLCLYLDGWLNACVAIERTVNVSKGITFDKKMSKRAARWIIPILFLIIMGTIIHEPISHELFEYPTQKYKPINNNLTMNKSMRNEIYSEYEIEHNVLCVIRYSRSVQTYNTITLFVHLVVPFLLNLCSALFIIFGTARQRSTTHNNQTLREHILKQINEHKQLLISPIILLIMALPRLIISLVSGCVDPSNNPWLYLCGYFTSFIPPMLIFAVFVLPSELYWKTFKDSITKWRRHGCW*
Ga0097680_1038985	Ga0097680_10389852	F001866	MAFVSERLQSMVVGVGDDDSTLIGDAYSSRIVELAWLIALGAELEQERAIDRRQYLHSMIVGISDDDSMSIIIDRNTSRIVELARLRSMLADREQEREIDRRQEYQSMVVGIGDDDATMMLVDRNASRVVELEVS*
Ga0097680_1039808	Ga0097680_10398082	F011950	MGLFGNKREKSEKVDKYEYHASSKGGRPGGYGPPALLGGGYFGGNPSYFDGFSQVAPSSQTGKSSKYANGNKSLYGGVDPMQQAMLLPPSSPAALQAQAAAMFSMQQYMQQQGQGAQFGGILPPIQMPLNVAQQTGILPAQSQPFYGAYPGQQPSTATPFVD
Ga0097680_1040759	Ga0097680_10407591	F092364	LLDKKQSSCVVGDQCNLHRKGIGLTINDILRNKIQRNKSLRNQSLLVQTTVGITMIMFVIGFTNGICSLITFKNKDLRKVGCGVYLLASSITSLLTITIFTIKFWFVIFIEMYSNVSSVILRTDCVFINPFLKLCLYFDGWLNGCVAIERTVNVAKGVRFDKKKSKHAAQWIIPILFILILGTIVHEPIHHDLFKYTTQKSKSINNNLTLNIAMENETNFEYEIEHNILCVTRYSQSVQTYNTITLFFHLIVPFFANLSSALFIILGTARRRSAAQKRQTFKEHVVEQIIEHKQLLLSPIILLILALPHLIISLVSGC
Ga0097680_1041654	Ga0097680_10416543	F015889	GLFYQCTAGVDGCLTRFWATTFLLCLLGLIFLLVGGIFIVWDIFQITDRRFAIPFLFFISSVLLTAGIFDYGSWAPLNYHSSRLMISAVVFAYSGLPITAFIAGRYSTFDRFVVTTATNGN*
Ga0097680_1042224	Ga0097680_10422242	F095751	IHPPVFQNRTFNWYRTQLVFYLMRFSPNTLAQVQNIIAQNFNPPSVEQHHPYVAVYVRRSDKVKSKEMSQAYTLKQYFDLFENDTRRTKISTIYLNSEEEGVFDEFNDFNKEKNGYYKLIRINVTKDVVWGKITGMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKILPFYTPEKRYLNNY*
Ga0097680_1043429	Ga0097680_10434291	F011159	NTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAILLGKRDLPNEAILLGKRDLPNEGILLGK*
Ga0097680_1047543	Ga0097680_10475431	F081545	KLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDRDKINEQDFTFLIRAFEQIQCIDAVNLLKG*
Ga0097680_1047977	Ga0097680_10479771	F094111	MLFNDVTYRFIDKTNCFKNMSTVEINRQRKKILSIQIQMFLRIWIGLFIYQQQYFTLATFSFNQPKFRPNTTWNSIATTFATQSFVGEGPYGIFVNSNNSIYIPNRQTGKIHIWLNENDLSPTKTISGSLSYPLSLFVTTNGDIYVDNGYNSRIDKWIRENETWISVMNVPSQCYGLFYILDAKDAEPL*
Ga0097680_1051483	Ga0097680_10514832	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIYANSIQVNQSYFTFMIDNQQIVGHRTLIFGLEQENQNISEEYEYRVYSSGCYYLNKENQWKSDGLRVGPKTNLSQTHCYSIHLT*
Ga0097680_1052021	Ga0097680_10520211	F001866	MLVERDIRHQAAGMIERRDVMAFVSEGLQSRVAEVGDDDSALVVDAHAKRISELARLLASRAELEQERAIDQRQHLHSIVFRVSDDDSMSIMIDRDSRRRVELARPRSLLADLEQERQIGQRQEHQSVVVGVSDDDAAMVVVDRNASS
Ga0097680_1056368	Ga0097680_10563681	F055010	HKIQSVFLVLADTFAILIVACYFGEYSFLLVAPDKDTQSPWPIIRGEHPATIFYDNKASVAYNIELDYVQLFHRPLTDFLTAICTLFATYTVFEITYGKLEMTLSFIDCLLRDNVHSSTRSPQVLELINELNSMKNM*
Ga0097680_1057697	Ga0097680_10576972	F017165	RVHVIGANQWLADTFTWRPDRHRYAPRWIKQAISTMTMIRSLVDDGESASMSMIPNEILFEIFSFL*
Ga0097680_1058639	Ga0097680_10586391	F094111	LIDDIYLFIDKTNCFENMSTIKKSFSFEMFLWIWIGLFIQQQYFTFATFSFNQPRFRTNTTWNSNAITFTNRSFVGSYPSGIFVNSNNSIYISNRETGQIHIWQNKNDLNPTKTISGNLSYPQSIFVTTNGDIYVDNGNNDRVDKWIQENETWISVMNVSS
Ga0097680_1061392	Ga0097680_10613921	F092364	QTAAGLTMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLAITMFTLKFWFVVLIQQYSIVRSSILQTDCVFVGPALKLCLYLDGWLNACVAIERTVNVSKGVNFDKKMSRHAARWVTLILPIFIMSTLIHEPIHHELFEHTTHKYNPINISHNLTMNLTMTNEHTVLCVIRYSRSVQTYNTITLFIHLVVPFVANLFSALFIIFGTARRRSTAKVNKKSFKNHAVNQMREHKQLLISPFILLLLALPRLIMSLVSGCVDPSENPWLYLSGYFISFTPPMLIFAVFV
Ga0097680_1064043	Ga0097680_10640432	F017165	RVHVIGANQWLADTFTWRPDRHRHAPSWMKQAVSTMTMIRSLVDESAMSMIPNELLFEIFSFL*
Ga0097680_1066626	Ga0097680_10666262	F094111	VRKIVRKSFHFDFIVLTLSYNQPRFCLNTSWNSNAMTFANRSFVSTAPRGIFVNSNDSIYILNQNTGEILIWQNENHLNLTKTISGSLSYPQSIFVTINGDIYVDNGDQNGRVDKWIRENETWTSVMMNVSSTCFGLFIDIYESLYCSTHEYDRVNKKWSNGTT
Ga0097680_1069839	Ga0097680_10698391	F094111	MFLRIWIGLFIQQQYFTIATFSFNQPRFRTNSTWNSIATTFPTQSLVGIQPHGIFVNSNNSIYIPNRQTGQIHIWLNENHLNPTKTIEGNLSDPFSLFVTTNGDIYVDNGQYNGRVDKWIVENERWISVMNVTSPCFGLFIDIYENLYCSMFYNHRVDKKWSNGTTTIVAG
Ga0097680_1072725	Ga0097680_10727251	F056741	CSEGFEPKTMNNEGTFHIQSKLTGLYLTFDPKTDIVYANGSTIDPDYRLVWGQGWAPKDLGRTVRNSEINRHFTMQDVLRLKGNDADTWEIFSFEQQSNTNYIAIKNLRYDQYLQVEQDFTISGQAKSITDACLFQLITPDGGYVPEGLKPSS*
Ga0097680_1076069	Ga0097680_10760691	F095751	KEMSQAYTLKQYFDLFDNDVQRVNISTVYLNSEDERVFNEFNEINKEKNGYYKLITIKTTKNVVYRKMTGMPRAQRGRIVLEFLTDLYIEAHADLHAGTLTSNWCRLVDEFRLVLGKKIPYYTPEKRFIMDG*
Ga0097680_1081028	Ga0097680_10810281	F017165	HVIGANQWLPDTFMWRAYFHQYAPKSIKQAVLTMTMIRSLVEDSAMSMIPNELLFEIFSFL*
Ga0097680_1081154	Ga0097680_10811542	F094111	MFFLRIWIVLFIYQQQYFTFAIVSFNQPRFRINATWNSNATTFANESLVGTLPFSVFVNSNNSIYIPNYETGEILIWQNENDLNPTKTISGNLSYPYSLFVTMNGDIFVDNGDKNGRVDKWIQENETWISVMNVSSAC
Ga0097680_1084165	Ga0097680_10841651	F081545	KLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTFLIRAFEQIQCIDAVNLLKG*
Ga0097680_1086592	Ga0097680_10865921	F094111	MFLRIWIGLFIQQQYLTSATFSFNQPRFRINATWNSSATTFTNQSFAGTLPFGIFVNSNNSIYILNRLTGQIHIWLNENHLNPTKTVSGNLLEPLSLFVTTNGDIYVDNGYNNSRVDKWIRENEGWISVMNVTSYCFGLFVDIYESLYCSMYYNHRVDKKWSNGITTI
Ga0097680_1099365	Ga0097680_10993651	F033870	MNVSMEAPRTPQHDLVAMAAALRGALLQRVEQGIQSSGLTNYFLYIVAKRLTFAGPLTIAGLTEQLRLNPRDIEDSLHEMLDRGMVARENDAWRITDGGRQALVAANDSGEVVLQDIRNAIGA