3300005909: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKF

Overview

Basic Information

• IMG/M Taxon OID: 3300005909
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116297 | Ga0075112
• Sample Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKF
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186558379
• Sequencing Scaffolds: 48
• Novel Protein Genes: 54
• Associated Families: 45

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
Not Available	28
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Luna cluster → Luna-1 subcluster → Aquiluna	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_38_15	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pyogenes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F002502	Metagenome / Metatranscriptome	553	Y
F003224	Metagenome / Metatranscriptome	499	N
F004896	Metagenome	419	N
F009218	Metagenome / Metatranscriptome	321	Y
F009733	Metagenome	313	N
F010230	Metagenome	306	Y
F010818	Metagenome / Metatranscriptome	298	Y
F017137	Metagenome / Metatranscriptome	242	Y
F018909	Metagenome / Metatranscriptome	232	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075112_1000092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	42213
Ga0075112_1000161	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	33127
Ga0075112_1000240	All Organisms → cellular organisms → Bacteria → Proteobacteria	25832
Ga0075112_1001329	Not Available	7957
Ga0075112_1001752	Not Available	6392
Ga0075112_1003021	All Organisms → cellular organisms → Bacteria → Proteobacteria	4360
Ga0075112_1004141	Not Available	3592
Ga0075112_1004556	Not Available	3400
Ga0075112_1005840	All Organisms → cellular organisms → Bacteria	2942
Ga0075112_1006080	All Organisms → cellular organisms → Bacteria	2876

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075112_1000092	Ga0075112_100009233	F060609	VNELQKSGAVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGTSDAYAATTGAGSFSLKGDSN*
Ga0075112_1000161	Ga0075112_10001611	F092080	MLLKCISIKQEGGLKMQDKRVTIRIPFEIWKNLRELQTMGKISSIQQAAVTSMDRFIESLKKGAEENQREAAKKRVLNVLVKEKPLGNWEDIHKERMEA
Ga0075112_1000240	Ga0075112_10002408	F060609	MLEPRTGESGDKRADSIDRRDFCKKALKRSSIVAAAGAVGYLAYKKPEIQSFFGAREAYANGTGPGRFSLRGDSN*
Ga0075112_1001329	Ga0075112_100132913	F036111	VEVQATFLFDPYTPDWPGELSRAVAVLSKVISDGAERAERKRERKSREEYAGIGHDDTGNGTVVAQRFHDLFDNS*
Ga0075112_1001752	Ga0075112_10017526	F000388	MKIIKVTKEYYETEDEKVYFFEPLEKEILVEDMQKIVDANERLIKELKDGKD*
Ga0075112_1003021	Ga0075112_10030213	F083694	MDKVEKLHKRQLARLLSHLEKTGQLTLELEKDLKRAYRFAFEDVETLLQGLDKENKNVENGA*
Ga0075112_1004141	Ga0075112_10041414	F029588	MINKTNYNFLIGLGKTGKNSAYLLIPFALAMLATVPTEYAWIAGVVVYMLKNYYEVKTGKKI*
Ga0075112_1004556	Ga0075112_10045562	F069520	MAEIDPQVFGGLIADVKTLMKQTERSREDQTVANNILFAKIDNLSANGCAVGAKLCSRVKSLEEKPAKLVAIGSMILAGLAVIGGACVWLLEKFRTL*
Ga0075112_1005840	Ga0075112_10058404	F092080	MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMDKLIESLKKGVKENRKEAAKNRVLNVLVKERPLGNWEDTHRERMEADADRS*
Ga0075112_1006080	Ga0075112_10060807	F074774	MRSIGLHLSEAFLRKRYVMDKKTPEEIAGECGVSVQLIYRQLKKFGLKR*
Ga0075112_1008157	Ga0075112_10081574	F054439	MVFVKKKQSTMKQLAYARKLFGGEGTCKKQIALDVGYSSAVANSVSSHIENKPGFNNAMAALAIDSNNLALSAMHEFKARGFKDFSNKELTSALNAIGNAWSKFNKVPEEMKTKNETNKLRTVILQQIENQTVTNPGEVPAKIIDVEPDVIDVNEDPGF*
Ga0075112_1008635	Ga0075112_10086353	F091388	LSHELNKMDKSSELRLKKKAKFYFTEKVICHVIKDPKGFVNGWFRSDLIDDWYFWFEDQRYPKEERRLFLVDIFDIKDYEGEKK*
Ga0075112_1009524	Ga0075112_10095245	F099390	MKDGTYTVRLDAEGIPMLTSQINMTDGYWVSDETGVSVHGELDAQGTISALQLMDIEDGEVVGVWQNKEVCYIDRSYHIRDKDEALLVGRGFRQIAIWDCANSQALDVLS*
Ga0075112_1009524	Ga0075112_10095246	F002502	MENITVGSQFTTQKSGVTGVVQEIVKNANGTSRVLLSVDGQDRWTTVK*
Ga0075112_1009750	Ga0075112_10097502	F083694	MDPVEKLKNRQLARLLSHLQKTGQLTLELEKDLKRAYRFAFEDVATLLQGIDKEKKDGQIPG*
Ga0075112_1010577	Ga0075112_10105774	F040583	MFIYLITLTNGEIVRVVTEGDPTIHPSFFGRVANVETLGQSDKLLSLV*
Ga0075112_1010619	Ga0075112_10106192	F044785	MKREQKWNTILNQYFREKEFYCYYELKQTDKETFPFSKIEKVQWDGLQATEKNGLVWKWSDEISRPKPCDGASIPPLPSYLIIKFKKEFCLIRFKEIVELRDKVVISINRSMAEKLSEKIIKI*
Ga0075112_1011095	Ga0075112_10110953	F077343	MSNYQPKCYRTEGGDKTVIASGGTLAMEPGSFIQFANPTGASDYFVDGNVSTTGSGTIDSPYKTIAEAIAASDISIALTANRWWARRNRIFVMGDTLTETLVKFPTKCDVIGLGSYDANTQPGIVGHHAPVGESYGTRFFNIKFNGVATATPVFTLTSETSGLQLQSCTLDGNAGTMTIGVQATASPFLVINDCDFVGTFVTSYLTFGTGQAGRTRITNNRMLGTAAKGIVAGSGMTSSWTPLIDGNIVHATGLTIDDDADKFSCVNNRLITSADIATTTAGYDFNLALACGNILTGLNGVAATVPFAVTAE*
Ga0075112_1015408	Ga0075112_10154082	F017137	VKNRCTCAVCLSREEVIVQEENLFETDAEKAKRVRYEKQEEKRAPKIQPDQVITLNAWLIGVLVAFVASAIVSFNGITAVAAFVGLSAGWMAFLFFFFIELMYLLFLVAYLLLESREGENSRGALAGMIFFAAIAVLANAFHTFDYWEWAFTEPRAWAGVVLSVSAPIAIISASKMASRVIFAKALVV*
Ga0075112_1017611	Ga0075112_10176111	F067269	MIKSHTGSYTRALERQLPDRDASFFWDTNDSKKKRKGYRDGLKYDAVSGTKRERYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNT
Ga0075112_1018887	Ga0075112_10188874	F021020	MSNKISLNNAVMTENYDLNIWDRRGYETEYEEEGWSIEVYSYPAVGSPYGSGDYKETITLTPAESKRMTLGWGEDLGGDYAPDNDFWLDKDTFFHTYRDIPERVANLLWALPAYEQSLDMYALPTV*
Ga0075112_1019496	Ga0075112_10194962	F060609	MKEPKAGESGDTRADSIDRRDFCKKAIKRSSIAAVAGVAGYIAYKKPAVRSFFGTKEAYANSTNAGTFSLKGDSD*
Ga0075112_1021861	Ga0075112_10218615	F088351	MSRESIYGDEPEFTVMKMVDGKETWISLAQLAAELETEKIEEVPIKECPVCGSRMHKVILGAPNDDDLANPKEWVTFTGCIVGENTPEWICLKCEDADSGEADPPADTGPDQLDD*
Ga0075112_1022862	Ga0075112_10228623	F022145	MIQNNMIPREIKKKNYTVQIGYSPKAIKDKLMKFITKNGDEFEISSEEMSSMLIGGVNSNTLEATFVESDRISVVEVGRQLECVLDKDMKKGDKINLNYKHPYPLEFALIEEAYKIAKIDKDIPRIVLTKEYIKEVRAKIKPDMTNYISKFYKSFKNLKLK*
Ga0075112_1026293	Ga0075112_10262931	F034145	RIVATLLKAAAGIGHPPTAVIFSDPSHTEWTKWDYRLIKAHYIIQDWYRDGIPLWWDESDRVTFDAKARTSKSRAAIERAQEVDGKKKSKSYGKYWVAEPRVMDGGELPSREEFLDEQEAKKGTPQKPPRSKNQHILQGKK*
Ga0075112_1026420	Ga0075112_10264202	F096357	MSNLLDHPTIKRLHRESSVTLTDLLDRKLFIEPPEEPCGHIHPSGWGLCYQEDLVQAEVERLRVARKRNPSLICAAALVVASAKGKLSEEQKNMAFYFTRYVEAENYEIDQLVRRSTGNHNSAEIRKEEAAERMETAARLWLKLDKPERDKCAIIAMRMGHPVDTVRRWRRKGWRSG*
Ga0075112_1032944	Ga0075112_10329443	F009218	MLQKTLIKMLDGVFFLKDEPESASGPDWKFRRKVIFGSYRLGFAMIIFGALTFLVDQWGVGVTLITGGVSLISIITTAYTLSA
Ga0075112_1033517	Ga0075112_10335171	F091749	KEIMLKSDEKSNAQNWELEVTCKNKKFLDAVVKAILSYGMIDFEVENVECMSNSDGWDGRYLVLMSCSWFSNLKKIAKDLAKIEKKFENEL*
Ga0075112_1037509	Ga0075112_10375092	F037978	VLNASYHLFDLDHLGLDGQAFIVIRDGKPTLAYRRFTRDRWSPEIMPNTPE*
Ga0075112_1037509	Ga0075112_10375093	F003224	MNEALFDSIGDIQLDRPWHNCTGQLCTYCERFDREDVQVLAEIDKTWRIQATIYRKSLAIGGLFTADTLIDSIGLPDGHPNQIGALFRSWSSMGVITSMGNYVVSTRESNNGRSIRMWKRTA*
Ga0075112_1037936	Ga0075112_10379361	F010230	QVELKLMPLLVLINGNEVRLVQLFQVKAKLVPLLVSINGNELRLLHSRQVELKLVLLLVLINGNEVRLVQFRQVWLKSVPLLVSINSNEVRLLQFHQVDSKLVPLLVSINGNELRLLQLCQAD*
Ga0075112_1039744	Ga0075112_10397441	F099974	MWRYFIMGAETKKLAQVSYVTDTDVSYYEIGEVEGSFQEAQLKDYIKSFGHEKLCSQLGYMQFQIWKAVREINVERDSQDGAKAASCTNDT*
Ga0075112_1040237	Ga0075112_10402372	F018909	MKWIKVAIGAVIAISVIPVIVTSVTALTGSGGDLESTVAGTLLDLAPLVFVASVLAFLFTKTGSAD*
Ga0075112_1042755	Ga0075112_10427552	F040946	MYPRLKIESDNHETKEVETLPVDFMMYEELNGNRPTSEQAMRLTIAYFYLEDKEPGDLKTVKLWARKNRVKVDILKDDVEPF*
Ga0075112_1044550	Ga0075112_10445502	F096357	MNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPEEPCGHIHPSGWFLCYQEDLVQAEVERLRAERKRNPSLILSAALVVASATGKLSEEQKNMAFYFTRHVEDHEYVLAQVVRRSTGGVRTAEKRKEEAAEKMEAAHGLWLKLDTPERDRCAIIATRRGCKADTVRGWKRKGWRSG*
Ga0075112_1044819	Ga0075112_10448192	F075651	MVKDEKKAVKQKAMFYFSEKLKCHVKKVPTGFVNGILKSELENDTFYWFEDLRTTGKDERLFLDEIFDIKDYEDEV*
Ga0075112_1046964	Ga0075112_10469641	F057778	MDEQAIEIKENLADYYANPEQYTFADLEEIFQDRDPFEFL*
Ga0075112_1046964	Ga0075112_10469643	F029288	MSKLGRYNEARRKVESQALFTSMLKAGKHNVVTPKKYKGTKQSMNHKAIRESRNDD*
Ga0075112_1047892	Ga0075112_10478923	F046685	SIPVSSDELYANAVQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTRDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMAQAINYVADELDGNSTIYNLDNNYTERTRIGHIMLNSMFFTLNRSLNGQEAKRMWKAMSLSDNLTQDNKGKFSEALKFWK*
Ga0075112_1049275	Ga0075112_10492752	F004896	MTLEITLGGSVIDLDLFDYSLAVAHGRSDVTADPTASNAQLVLRGDTGPLLDLADTVAISFNGVDRFTGAISDLNVSFISTVTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTA
Ga0075112_1056757	Ga0075112_10567571	F091388	MESEKELRLKQKANFYFTEKLVCHIIKEPKGFVNGWFRSDLIDDMYYMFEDQRWDGEERRLFLCDIFDIKDYEVEQ*
Ga0075112_1057586	Ga0075112_10575862	F009733	VSEIDQELHVDTPPEPVEPKKKPTSSKHPKVQDETERARAIVRAKLKG*
Ga0075112_1057586	Ga0075112_10575863	F010818	VDFGDIVGLIATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGL*
Ga0075112_1057804	Ga0075112_10578041	F060609	MNELEKSGDVSVSRREFCKKAIKRSSVAAAVGVAGYLAYKKPAVRSFFGAGDAYAANTGDDFLSGIAQRIVVRKSV*
Ga0075112_1059882	Ga0075112_10598821	F097603	VNPLSNINKDELVTRPFGIIYSVDPEGVREVQFSDVKASAYKEEELLKGDMQYASGVDDFSQGVGGGAGSATEVRHLRESTLERVRMFVNHLGDAYGDVLRYWMDLSRQLMSEKMTIRIVGADGKPEYPLIEKDDLLGMYDYKAKVLPSIAGQDEVKKKQDMDLYQLLINLPFVDPQKLTSKVITDWGWSLDSVTKSEEDQAPAAVGPDGQPL
Ga0075112_1064750	Ga0075112_10647502	F063485	MNLLDETELAYCDVCGNYVPTVEDEGDLFCAYEYAEYPDIANIVG*
Ga0075112_1066867	Ga0075112_10668671	F031722	MHIDETATTQTQKVTKPMFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVD
Ga0075112_1066867	Ga0075112_10668672	F043706	MRHILYGILSTALLVNLFAMALDTGQASVWLIILCGVVVIFAGGGKQQHPH*
Ga0075112_1068098	Ga0075112_10680981	F088949	MKKDAKIETTPGLDANQQVETNAYVPTYKVKPEFKEAIVKAIGQQPFNQTAGIINAINVEVIDHNTLTQLINVIGNFPYIQVAHLLTNVNTYVEQIIEE*
Ga0075112_1073363	Ga0075112_10733632	F043706	MHILYAILSTALLVNLFAMALDTGQTSVWVIILCAVVIIFAGGGK*
Ga0075112_1076930	Ga0075112_10769301	F010230	INGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLYQDKAKLVPLLVSINGNEVRLVQSHQAPPKLVPLLVLINGNELRLVQLFQVWKKLVPLLVLINGNELRLLQFRQVSPKLVPLLVSINAGNEVRLVQLCQVVLKLVPLLVSINGNELRLLQLCQASLKLMPLLVSINGNEVR
Ga0075112_1079171	Ga0075112_10791712	F028432	DATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWGEVGAGAQWFEIVTNSDLVRL*
Ga0075112_1080840	Ga0075112_10808402	F029620	ASSGGAAQVFPLRKGLIDITTGTVTDPVNGKRPLIAHCVADGSLTLTWQDDSSTVVSFIAGDDFSMVEAEAVAVTTGSFHFA*
Ga0075112_1081713	Ga0075112_10817132	F100939	MYRDKSTMGNRLAPQKNENMSDEEMKRKARERAMMNRLSSMPGKASS*