3300005851: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPADES assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300005851
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093345 | Ga0079996
• Sample Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPADES assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73012051
• Sequencing Scaffolds: 12
• Novel Protein Genes: 18
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N
F069506	Metagenome	124	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079996_102180	Not Available	38282
Ga0079996_102570	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	5883
Ga0079996_103386	Not Available	3830
Ga0079996_104496	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1374
Ga0079996_105440	Not Available	1344
Ga0079996_109425	Not Available	664
Ga0079996_110067	All Organisms → cellular organisms → Bacteria	7444
Ga0079996_110700	Not Available	3287
Ga0079996_112244	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	21006
Ga0079996_113383	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2896
Ga0079996_117060	Not Available	712
Ga0079996_134771	All Organisms → cellular organisms → Bacteria	7696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079996_102180	Ga0079996_10218037	F021443	MRYLLNDERLTFTFTSSYVECHNYVYGYYQINEILSFAVIDLVFKIINQQKRKSIVLKKRKSIIHLLNYIDILNFNSNSSKFEITFPLENEYESSLIFNLFLYRRRYNDLHKNNLKVIEHKNSCIIRLKYDGSDIIQPKNVNLATMLMRILKKEEIDMIDPNGMIFYCIFLM*
Ga0079996_102570	Ga0079996_1025705	F051572	MTSRTHSGPFAEVRTFADIVLEGGCKKSLQFLNAYFDLCVLAVLIKAAPAGPMVRLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079996_102570	Ga0079996_1025706	F038745	MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKHREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079996_103386	Ga0079996_1033861	F104114	CIMERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG*
Ga0079996_104496	Ga0079996_1044961	F013155	MELYQMAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLVQQFLSNEKPVAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQENFVRQMAEKLQ*
Ga0079996_105440	Ga0079996_1054401	F021443	MKYLLDDERLTFRFGPSYVTCYNYDYSYQINGILSFAIIDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDTLNFNSNSSKFNITFRLENKYKTPLIYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPSRIQPKNVNLATMLIHILEQKEIDMIDANGIIFYCVFLM*
Ga0079996_105440	Ga0079996_1054402	F021443	MKCMLNNEKLTFKFAHPYPPYVTCYNYDYSYYQINGILSFAVIDLVFKIVNQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFPLENEYEPLLIYNLYLHRGLHRERYYKDLHKNNLKVIEHKNLCIIKLEYDCSTRIQPKNVNLATMLIHILEQKEIDTDLNGIIFYCIFLM*
Ga0079996_109425	Ga0079996_1094252	F021443	MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRERYYKNLYKNNLKVIERENLCIIELDDDYASRIQPKNVNLVTMLTHT
Ga0079996_110067	Ga0079996_1100674	F038745	MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELGLPAPALKALAEELGPEPRWHDALAASFFRLYLGVYRRRRVDGRDVALALCLWAQKKRLEDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079996_110067	Ga0079996_1100675	F051572	VRTFADVVLEGGCKKSLQFLNTHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079996_110700	Ga0079996_1107002	F021443	MKCLLNDERLTFRFAHPYPPYVNYNDSYYQINEILSFAVIDLVFKIINQQKRKKSIILKKRKPIIHLLNYIDILNFGSNSNKFEITFPLENEYKVLLIFNLYLYRSSHQERYYKDFYKDRLEVIERENLCIIKLEDDYVNIIQPKNLNLVAMLMHILTKEEIDMLEGDGTIFYCIFLI*
Ga0079996_110700	Ga0079996_1107003	F021443	MKCMLNNKKLTFEFGHPYPPYVTCNNDSYYQINEILSFAVIDLAFKIISQQERKSIVLKKRKSIIHLLNYIDILNFNSNKFEITFPLENKYKALLMYNLFLYRSSHQERYYKDLYKNNLKVIENKNSCIIELKYDYSSRIQPKNVNLTTMLMRILAKKEIDTDLNGIIFYCVFLM*
Ga0079996_110700	Ga0079996_1107004	F021443	MKCLLNDERLTFRFGHSYVTCYNYDNSYYQINEILSFAIIDLVFKIVNQQKRKSIVLKKRKSIIHLLNYIDMLNFNSNCSKFNITLRLENKYKTPLTYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPNSIQPKNVNLATMLMHILEKEEIDMIDANGIIFYCVFLM*
Ga0079996_112244	Ga0079996_1122444	F038745	MDKAVVVVCGELMQISLAFSAYYPLCSGGQPCAFAEAVERLIRRAASARGAEELLEAINGRVRLEGLGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLAFALCLWAQKKRREDPRDPLWRAAELEPDRLYTEEEARKALEINEAFFRRLWRRALVFHRGEKAYGFQLILAALSLMAAPPRSA*
Ga0079996_112244	Ga0079996_1122445	F051572	MSRGRAYGGPFAEVWEFADVVLKGGCKKSPQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGETLAQLRRELGDKAPAEALLAKLVELFLKELEA*
Ga0079996_113383	Ga0079996_1133832	F013155	MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKRPLDPREIQENFVRQMAEKLQ*
Ga0079996_117060	Ga0079996_1170601	F021443	MKCTLNNKKLIFKFAYPHYPYVTCYNDNCYQINEILSFAVIDLVFKIMIQQERKSIVLKKRKPIIHLLNYIDVLNFNSNSSKLDIDFPLENEYKLQLIYKLYSYRNSHQERYYKYLCKNNLKVIESENLCIIGLEYDSISTIQPKNVNLTAMLMSILEKKEIDTDLNGIIFYCVFLM*
Ga0079996_134771	Ga0079996_13477116	F069506	MQLAQVPYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALTAA*