NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005807

3300005807: Basalt sediment microbial communities from Loihi, Hawaii, USA - Two Loihi Rocks



Overview

Basic Information
IMG/M Taxon OID3300005807 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110098 | Gp0072820 | Ga0079971
Sample NameBasalt sediment microbial communities from Loihi, Hawaii, USA - Two Loihi Rocks
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size11731177
Sequencing Scaffolds52
Novel Protein Genes61
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium13
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium10
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium4
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.11
Not Available10
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBasalt Sediment Microbial Communities From Loihi, Hawaii, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Benthic → Basalt Sediment → Basalt Sediment Microbial Communities From Loihi, Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)ocean biomemarine benthic featurebasalt
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationLo'ihi Seamount, Hawai'I
CoordinatesLat. (o)18.92Long. (o)-155.27Alt. (m)N/ADepth (m)5000
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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