NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005795

3300005795: Subglacial sediment microbial community from Lake Whillans, Antarctica - at 4-6 cm depth



Overview

Basic Information
IMG/M Taxon OID3300005795 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0112339 | Gp0119884 | Ga0079491
Sample NameSubglacial sediment microbial community from Lake Whillans, Antarctica - at 4-6 cm depth
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45162646
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubglacial Freshwater Microbial Communities From Lake Whillans, Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomesubglacial lakelake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationWest Antarctica
CoordinatesLat. (o)-84.24Long. (o)-153.694Alt. (m)N/ADepth (m).04 to .06
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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