3300005785: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI

Overview

Basic Information

• IMG/M Taxon OID: 3300005785
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114881 | Gp0119451 | Ga0078432
• Sample Name: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Biotechnology (CeBiTec), Bielefeld Univeristy
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26085049
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep-Sea Sediment Bacterial And Archaeal Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → deep marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Fram Strait
• Coordinates
  • Lat. (^o): 77.978277
  • Long. (^o): 0.163645
  • Alt. (m): N/A
  • Depth (m): 3500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003058	Metagenome / Metatranscriptome	510	Y
F013764	Metagenome	268	Y
F022015	Metagenome / Metatranscriptome	216	Y
F027541	Metagenome	194	Y
F028812	Metagenome	190	Y
F055778	Metagenome / Metatranscriptome	138	Y
F074900	Metagenome	119	Y
F077325	Metagenome	117	Y
F082716	Metagenome	113	Y
F087249	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0078432_100099	All Organisms → cellular organisms → Archaea	4451
Ga0078432_100239	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3420
Ga0078432_100755	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	2383
Ga0078432_101013	All Organisms → cellular organisms → Bacteria	2159
Ga0078432_102445	All Organisms → cellular organisms → Archaea	1548
Ga0078432_102820	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1466
Ga0078432_103450	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1352
Ga0078432_105440	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113
Ga0078432_109478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	864
Ga0078432_115784	Not Available	673

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0078432_100099	Ga0078432_1000992	F082716	MIDKKDFRQMPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQFIESKLYFGHEVYLNYAKELYRDFC*
Ga0078432_100239	Ga0078432_1002393	F105217	MESGMNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISTEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEEKNTNEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYESRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*
Ga0078432_100755	Ga0078432_1007553	F093897	MGIAITGLVVGFVLLYDIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDAAKEESKEFVEGIIKNHYEKHGINILDLSLELNVYEGVRCEACNCLGWDRLSIKISENELDLISDSEGWEPKG*
Ga0078432_101013	Ga0078432_1010134	F087249	MQDTDEPTTQGIRARMEAYFTAASESTEIDPTDFGAIDEIATKFLDSLTPREMGILMYDDPQPLSLQEVDNDIKKKYRAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN*
Ga0078432_102445	Ga0078432_1024453	F013764	MSMSTPSFFFFRNSKKNKSTSGLPPYSKRALIAVTVAIPMAFGLNIPLNTFGAFMPVWGIIMINAIVIPSYMTFIIPRASKLFATWLNPTITKGVN*
Ga0078432_102820	Ga0078432_1028202	F055778	MLSNVDLPEPELPTIKTTSPCSIESDTLSRAFTLFSPSP*
Ga0078432_103450	Ga0078432_1034503	F077325	MSRKGNWTEKDEATIKAIVVNMINQKQMFRELGETGELHDSFDVKNSREYVLGLFTGIVINLFANYWVSEHEAGLLPEDLAYLYHKIALFHDMIVEGLFE*
Ga0078432_105440	Ga0078432_1054401	F074900	MAAKIVNLANPDVGETLCVSVEDAEQALAAMVERFKSQGYRVDEQHMPDEDYPQYKVIDFDDAWVGTYTIILE*
Ga0078432_109478	Ga0078432_1094782	F103292	MNLRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKIVASPRTEDARIRDRKITDQYYGPKSVRAHSLEALRRTVDEKIENDIGPVNKWTADPG*
Ga0078432_115784	Ga0078432_1157842	F028812	MNPDLDNVIRQAIGDAHAAGIDHIGQTVVAVQAVQLARPDMTAADAVAAVNRMRRS*
Ga0078432_116183	Ga0078432_1161834	F027541	MLSDFINVMNFIFIANDMWMLWTAFILGGAFIWKIKK*
Ga0078432_122170	Ga0078432_1221702	F091044	GSLALASLNRACRDHRPDFSATLTTMAFDHSSLR*
Ga0078432_123077	Ga0078432_1230773	F093896	MELTSSERNIILVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKIND
Ga0078432_125668	Ga0078432_1256681	F003058	MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNQLEAKEDYEAAGIVANKIKHLKNKYNL*
Ga0078432_126622	Ga0078432_1266221	F022015	TMRQYRTWQQAFDEMNASVLKHEIICAIASEVAGKPVENLIGFTNEQRDLVWNDYYNTTELC*