3300005783: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX

Overview

Basic Information

• IMG/M Taxon OID: 3300005783
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114881 | Gp0119452 | Ga0078430
• Sample Name: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Biotechnology (CeBiTec), Bielefeld Univeristy
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71398089
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → Viruses → Predicted Viral	2
Not Available	10
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → Collimonas fungivorans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep-Sea Sediment Bacterial And Archaeal Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → deep marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Fram Strait
• Coordinates
  • Lat. (^o): 77.950787
  • Long. (^o): -1.627126
  • Alt. (m): N/A
  • Depth (m): 5500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F001728	Metagenome / Metatranscriptome	645	Y
F005817	Metagenome / Metatranscriptome	389	N
F011673	Metagenome	288	Y
F020359	Metagenome / Metatranscriptome	224	Y
F025751	Metagenome	200	Y
F028812	Metagenome	190	Y
F055187	Metagenome / Metatranscriptome	139	N
F055778	Metagenome / Metatranscriptome	138	Y
F062779	Metagenome	130	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0078430_100238	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	8545
Ga0078430_100286	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	7752
Ga0078430_100532	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	5709
Ga0078430_100885	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4406
Ga0078430_101036	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	4047
Ga0078430_108041	All Organisms → cellular organisms → Bacteria	1534
Ga0078430_108817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1470
Ga0078430_110028	All Organisms → Viruses → Predicted Viral	1380
Ga0078430_110569	All Organisms → Viruses → Predicted Viral	1345
Ga0078430_111326	Not Available	1301

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0078430_100238	Ga0078430_10023810	F093897	VKPGFYISMGIAIIGLVVGFVLLYDIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDATKEESKEFVEGIIKNHYEKQGINILDLSLELNVYEGVRCEACNCLGWDRLSIKIPEKELELISDSEGWEPKG*
Ga0078430_100286	Ga0078430_1002865	F055778	MFSNVDLPEPELPTIKTTSPCSIESDTLSRAFTLFSPSP*
Ga0078430_100532	Ga0078430_1005329	F077325	MSRKGNWTEKDEATIKAIVVNMINQKQMFRDLGETGELHDSFAIQNSREYVLGLFTGIVINLFANYWVSEHEAGLLPEDLAYLYHKIALFHDMIVEGLFE*
Ga0078430_100885	Ga0078430_1008857	F105217	MESGLNTNKERNLLIDSIQYRIFYSEVNLDKIPTSISLDVFPNDKISAEIVIDGFLFYANGSLDLVFAEINKKLSLGLASNQINPLDIIQALETKHTDEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDDPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*
Ga0078430_101036	Ga0078430_1010362	F082716	MIDKKDFRQMPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQLIESKLYFGHDAYLNYAKELYRDFC*
Ga0078430_107343	Ga0078430_1073433	F084079	MATRQTTFTGFDGNGYCVGDRVQIHPATDLWMRGARYGVVVGSSLTSSDRVKVELDRIPGRTFAGSEDTFKGV*
Ga0078430_108041	Ga0078430_1080413	F093891	MYCSKTLFWRFGIAGTALLAAIAVYCLVRIHPPELLTPFQSTILILAGQAGLFGSAPSLLYIFAIGLIVGTFASTPASARTQCLIWLSLALLLEISQHPLIAEPLISWLADTLFVSTWEVIEPYWKWGVFDPLDMIATAVGGLAALILLTYFPVG
Ga0078430_108817	Ga0078430_1088172	F105207	VKLINSIRASMLLGKGHKFLENGRYQEALEKALKAKSLKLEEQFEWLCHSIEGKSRYHLGDKENALPSLRRAQEILASKLEKEKESKPLRNIMNDITRYIEKIEHGDT*
Ga0078430_110028	Ga0078430_1100282	F077318	MIANIIKTLQSNEFYGAGTYTELAKGKNEYVTTWKGFVNKCKRVWH*
Ga0078430_110569	Ga0078430_1105693	F005817	MRSNLLSRLKPEFKQGLEDNKTRYPASIDDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
Ga0078430_111326	Ga0078430_1113262	F020359	MAARKTGQKSSTEFWSKVLSAPKVRRILENRGFSPEGFRKDYEADTSRGPRSPKKPDRATMDAVEMFQELGDFEALKTALGTKSAAVANSALRRVLQFKAKGGVKTIRRRAGALPISPPP
Ga0078430_113351	Ga0078430_1133513	F093897	DIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDATKEESKEFVEGIIKNHYEKQGIDILDLSLELNVYEGVRCEACNCLGWDRLSINIPENELELISDSEGWEPKG*
Ga0078430_118954	Ga0078430_1189543	F055187	MRVVNGNVIKSPADLVGLKPFKDAKLLRHEAMERMKRHIERKLKQSREEARLAQPYVRSEDAPSWDSWLG*
Ga0078430_120861	Ga0078430_1208611	F001728	MNCIELKETDKKDHYRLFVNGVDIHGEHERSTWRHLIEIIDNKIYNY*
Ga0078430_128105	Ga0078430_1281051	F079636	AVTIAGDTQVYGFDLSVNDSLVMPVRKEFEAHDDPTLLRQQKQGFFGWEEVGFALLDSRMVALGVIDRS*
Ga0078430_130070	Ga0078430_1300702	F011673	MNKQSKILPICLQPRILAAVSFIHKSPDKEIGLERINKVRRKLSDREMLYVLSLLVFDQLLDMVQDSDEFKNLVPIKRTIH*
Ga0078430_130070	Ga0078430_1300703	F000423	MKINKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGEPQYRTASKKWEINNEQTI*
Ga0078430_137659	Ga0078430_1376592	F020359	MSVPKRTGGRKAAEEFWSKVLAAPKVKRILEKRGFSPDAFQRDYEADTSRGPRIPKRPSRSQIDAVEAFQRSGDFEALKRALTTESSAVANSTLRRVVQFTALGGVKTVRRQPTV*
Ga0078430_148797	Ga0078430_1487971	F025751	MDSETRMWMRLHNLIDEDNWELIVYIYRVNANGRKITPYLAKWNMHAGLLDSIRDEFGTGEYHLMIRDGKTMVFTGTIGVARPLRR*
Ga0078430_149195	Ga0078430_1491953	F028812	RFMNPDIDNVIRQTLGDALAAGFDHIGQTVLAVQAVQIARPDMTDADVLAAVNLVQQE*
Ga0078430_150603	Ga0078430_1506031	F020359	MAVFKQIGGRKGSEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGPRTPKRPARSQIDAVEAFQRTGDFESLKRALSTESSAVANSTLRRVVQFTALGGVKIVRRQPTV*
Ga0078430_154057	Ga0078430_1540571	F090405	MNFAISTGVLLVFLLAGVAAADPPDCARSLRQINHYEEMVLRAEQLGNREWANKTQSHVDLLEDRLASRCPNYTDRDERQEAARQFARLLKVAADVAVKFFTMGVY*
Ga0078430_160556	Ga0078430_1605562	F084258	MRSETELKNQIQKAQRADQLLNDPLIQEFIISVRGDLLNKFESTGLDNEKERTAAWHQSQVLNNFLDKFTKAIKEGKNAQLTLIERANIKLQKVI*
Ga0078430_164929	Ga0078430_1649291	F062779	MPLITDSEMDDFDAVILKAGFDVDDFRVIDLEKELHPLTGTVTVHRISTDHAITYRAGHGSTWVADFLVDFYSGEYGRP*