NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005733

3300005733: Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14



Overview

Basic Information
IMG/M Taxon OID3300005733 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114816 | Gp0117150 | Ga0076921
Sample NameSeawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Wisconsin, Madison
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size63483714
Sequencing Scaffolds19
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria5
Not Available7
All Organisms → Viruses → environmental samples → uncultured marine virus3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C2811
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED371
All Organisms → Viruses → environmental samples → uncultured virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Degradation Of Oil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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