3300005464: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0025m

Overview

Basic Information

• IMG/M Taxon OID: 3300005464
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114420 | Gp0111510 | Ga0068484
• Sample Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0025m
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35604101
• Sequencing Scaffolds: 49
• Novel Protein Genes: 55
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → Viruses → Predicted Viral	12
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	18
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F001026	Metagenome / Metatranscriptome	802	Y
F001392	Metagenome / Metatranscriptome	707	Y
F001479	Metagenome / Metatranscriptome	687	Y
F004842	Metagenome / Metatranscriptome	421	Y
F005118	Metagenome	411	Y
F006794	Metagenome	364	Y
F013094	Metagenome / Metatranscriptome	274	Y
F014025	Metagenome / Metatranscriptome	266	Y
F014748	Metagenome / Metatranscriptome	260	N
F016534	Metagenome	246	Y
F018383	Metagenome / Metatranscriptome	235	Y
F020546	Metagenome / Metatranscriptome	223	Y
F024413	Metagenome	206	Y
F031896	Metagenome	181	Y
F033464	Metagenome / Metatranscriptome	177	Y
F034958	Metagenome / Metatranscriptome	173	Y
F035799	Metagenome	171	Y
F043449	Metagenome / Metatranscriptome	156	N
F043607	Metagenome / Metatranscriptome	156	Y
F043982	Metagenome / Metatranscriptome	155	Y
F043984	Metagenome	155	Y
F044551	Metagenome / Metatranscriptome	154	Y
F049045	Metagenome / Metatranscriptome	147	Y
F049704	Metagenome / Metatranscriptome	146	N
F058219	Metagenome / Metatranscriptome	135	N
F059069	Metagenome / Metatranscriptome	134	N
F063774	Metagenome / Metatranscriptome	129	N
F068935	Metagenome / Metatranscriptome	124	N
F068938	Metagenome / Metatranscriptome	124	N
F073668	Metagenome	120	N
F092181	Metagenome / Metatranscriptome	107	Y
F101340	Metagenome	102	Y
F103871	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068484_100370	Not Available	823
Ga0068484_100373	All Organisms → Viruses → Predicted Viral	3854
Ga0068484_100447	Not Available	1628
Ga0068484_100517	Not Available	835
Ga0068484_100556	All Organisms → Viruses → unclassified viruses → Virus sp.	1936
Ga0068484_100598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	4124
Ga0068484_100747	Not Available	1165
Ga0068484_100779	All Organisms → Viruses → Predicted Viral	2466
Ga0068484_100817	All Organisms → Viruses → Predicted Viral	1278
Ga0068484_101219	Not Available	719
Ga0068484_101259	All Organisms → Viruses → Predicted Viral	1329
Ga0068484_101265	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	952
Ga0068484_102398	All Organisms → Viruses → Predicted Viral	2605
Ga0068484_102521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	4704
Ga0068484_102610	Not Available	1253
Ga0068484_102750	All Organisms → Viruses → Predicted Viral	1091
Ga0068484_103012	Not Available	965
Ga0068484_103029	All Organisms → Viruses → Predicted Viral	1120
Ga0068484_103172	All Organisms → Viruses → Predicted Viral	1055
Ga0068484_103191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	7079
Ga0068484_103192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	5623
Ga0068484_103206	Not Available	576
Ga0068484_103271	Not Available	713
Ga0068484_103576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	5471
Ga0068484_103736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	975
Ga0068484_103774	All Organisms → Viruses → Predicted Viral	1092
Ga0068484_104406	All Organisms → cellular organisms → Bacteria	959
Ga0068484_104722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus	826
Ga0068484_106026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	9343
Ga0068484_107154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	6804
Ga0068484_108346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2053
Ga0068484_108465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1991
Ga0068484_109257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	4786
Ga0068484_109410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1472
Ga0068484_109946	Not Available	693
Ga0068484_110938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	4609
Ga0068484_111911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1311
Ga0068484_113022	All Organisms → Viruses → Predicted Viral	1350
Ga0068484_113426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1654
Ga0068484_114032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1763
Ga0068484_114268	Not Available	1574
Ga0068484_114532	All Organisms → Viruses → Predicted Viral	1418
Ga0068484_114618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1571
Ga0068484_114721	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	761
Ga0068484_115033	All Organisms → Viruses → Predicted Viral	1888
Ga0068484_115231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2142
Ga0068484_115536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2696
Ga0068484_115785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2284
Ga0068484_116085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1372

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068484_100370	Ga0068484_1003701	F049704	MTDHYYYYEAVMGTGKKIHLFARDDIEAAYRATHIAKWHWKTTLTDIYLDKHHHYNEKRISEQLQHDS*
Ga0068484_100373	Ga0068484_1003734	F006794	MTSKAKTLLKVGLPLVIVIQLISITFLLGKMSKDKAFSCKAVGNYFVCKQIELK*
Ga0068484_100447	Ga0068484_1004471	F068938	MQRLVSPELRVYTVSDREALGELVAELRLDKTLAGNLRQLLGFKTVGRGRQARQMAGNWQLLESVRWLKHLESGNLVPVVGSNAIRIFKRCCPQTPDAR*
Ga0068484_100517	Ga0068484_1005172	F043984	MSMSIADMYQEMIDQYTEMYMYRKTHKGIRGSDPHEDILDDMSAVEVDMEYTNES*
Ga0068484_100556	Ga0068484_1005563	F043982	MYNVLLFSSLGIAVLSLILCLYACARVGKFINDTSGLDWAAIANITGDLSTLKKTIQTLNNRINGMHSPKIQEQELMMQLLKNAPNQMTNGEVKNIGG*
Ga0068484_100598	Ga0068484_1005983	F016534	VKDFELDFPQFVGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSIQFPYLKKKFFKNQLIT*
Ga0068484_100747	Ga0068484_1007474	F063774	MRCRCEQLLSASRKRLEAARVCAFAARISTFAEHHRKEAARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERAGANLDHFGEEIRFENDSVLLAMAGIIATRAESAEAA*
Ga0068484_100779	Ga0068484_1007794	F043984	MSMSISEMYQEMIDQYTEMYMYRKAHKGVRSGETNLEEILDDLSAVEMDIEYTNET*
Ga0068484_100779	Ga0068484_1007799	F059069	MRINQYVVYTSPVKIVNDFAEACKIADDYFNDTGYIVAVEETNPVVYPEYEVA*
Ga0068484_100817	Ga0068484_1008175	F044551	TMKPYIAYIIIGLFFMTLIRTSLKIDRSERNQRLYDELCQVDASYCKES*
Ga0068484_101031	Ga0068484_1010311	F043607	MKDNYKKFYMMFDKRLKNLILCSNLNSDGGVVSFAELIIWQSK*
Ga0068484_101219	Ga0068484_1012191	F006794	MTSKAKTLLKVGIPLVIVIQLISITFLLARLNRDKAFSCKTAREYLVCRQVELP*
Ga0068484_101259	Ga0068484_1012593	F058219	MSKSKKQLKKDLKYLKKHLDDNKEINQIIKHTEKIGISSAQYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWISNKMEDY*
Ga0068484_101265	Ga0068484_1012652	F034958	MKKKTLVQQKKDNLEFCFETLGLNKKQTKEVLAATNEIGVNVEYFANEFMETSSVRVHENDYLNIAMFNAMFWEW*
Ga0068484_102398	Ga0068484_1023981	F014025	MNKLDNYELSTLHYTLCHYIGSQKTQLDEDEIEWLHTLREKVDNIMQLQAKYDMECG*
Ga0068484_102398	Ga0068484_1023984	F058219	MSKSKKQFKKDLKYLKKHLDDKKEINQVIEHTKKIGISSEYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWIGNKMEDY*
Ga0068484_102398	Ga0068484_1023985	F020546	MTTKTDPNQNYTIKEFYIKVKGDYGKEKIVRVNDSGDKLLTLITDLGWDYQRMSMSGRQVFDEIHQLLGTIPEGEVYMEI*
Ga0068484_102398	Ga0068484_1023987	F001479	MSKEMLFLCDVYDAWLIKNKLPHRCASEILYGADTMNKLTANQSYWLESFISTWDVIADNT*
Ga0068484_102521	Ga0068484_1025213	F035799	VFKTINKSITSILLFMICFIKSGFLLFLDQDADLFLVAALMGMRQLLDMGLGREGG*
Ga0068484_102610	Ga0068484_1026101	F063774	LSASCKRLEAARVCAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERAGVNLDHFGEEIRFENDSVLLAMAGIIATRAESAEAA*
Ga0068484_102750	Ga0068484_1027501	F000802	MYFDPKMTLEEYEDFKLHDEINIGYDVEDDDLPEEIEEDSWIDGLLTSGFHAVNDDELFGEEITGYSLY*
Ga0068484_103012	Ga0068484_1030121	F092181	IATAKREMQADVKSTLIGAIDKPTIHVNRTRDITLGFIKLKNELRSNAKPSLEFLDFILIWLNLLYFR*
Ga0068484_103029	Ga0068484_1030292	F006794	MTSKVKTLLKVGLPLVIVIQLISITFLLARLNRDKAFSCKTAREYLVCRQVELP*
Ga0068484_103172	Ga0068484_1031723	F073668	MSNLPNLREDVDNLLREVVGDDKNDKKRVANLNEENSDDEEVLLS*
Ga0068484_103191	Ga0068484_1031914	F035799	VFKTINKSITSILLFMISFIKSGFLLFSDQDVDLFQVAALMDMRQLLDMDLGREGG*
Ga0068484_103192	Ga0068484_1031925	F035799	VFKTINKSLTSILLLMISFIKSGFLLFSDQDADLFQVAALMDTRQLLDMVLGREGG*
Ga0068484_103206	Ga0068484_1032063	F001392	MKPVINRADIIGGLKSVKLAKLNPQNYQAGAGVSEDFELLLNFKNGNRIN*RT*
Ga0068484_103271	Ga0068484_1032712	F001026	MAKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPRELPDREEVLLNLVYAKAFTIGWDAHINPKVDFDLHKNEDRIFKYK*
Ga0068484_103576	Ga0068484_1035763	F035799	VFKTINKSITSILLFMISSTKSGFLLFSDQDVDLFQVAALMDMRQLLDMVLGREGG*
Ga0068484_103736	Ga0068484_1037362	F103871	MVQIPGLISDFSKKKPPAKAGLNDLCALAGFIKRPQVALTQR*
Ga0068484_103774	Ga0068484_1037741	F068935	DWEFAGQAKPGNLLQEPFMDYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKENLCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISREPIVHQYKVHYE*
Ga0068484_104406	Ga0068484_1044061	F043449	EPFNKSDKTANNVKNVSRDTKNFEILSRALYLPRINITPEIIRIPIDKSIAGKVEKKGILVKRTPETKLTAAIVKVPVIRLTIRNKGRYKEFLSLKPSNNDLPVDAVNLVPTNKNGYFKRLVRRIRPTNENPNLAPAVVDDNK*
Ga0068484_104722	Ga0068484_1047223	F049045	MTVAEVKEMLSKFDDDEQVTFYFLKDNILTNCQLEDINSYGMGIEFTIQDTSEYFEEAA*
Ga0068484_106026	Ga0068484_1060261	F004842	FLRSHQLSIKGNKDATTGVLGTIPDIGAIKKAIKEINFLGVRILSEEINSLTLSKAPLLNNAEETANKPIRVIKEGLPNPAKAFSGERTPVDINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIQNLFNSIYPKTIFQKSLIRIIFFKKLFKNRFFLEYP*
Ga0068484_107154	Ga0068484_1071541	F031896	MPKAFRRFLKKLPKKIQTIKSHLESFYHPKYEIAVVVYKFLIYIFLIFIFLIKHSR*
Ga0068484_108346	Ga0068484_1083461	F004842	IGNKDATTGVLGTIPDIGAIKKAIKEINFLGVLILSDEINSLTLSKAPLLNNAEETANKPIRVIKDGLPNPAKAFSGERTPVAMNIPTHNKPVNSGAIVFFINKIIDIIKRTTVINASKLLITTAIKFIQNLFNSIYPKTIFQKSLIEIIFFKKPF*
Ga0068484_108465	Ga0068484_1084653	F031896	MPKAFRRFLKKLPKKIQTKNTHLESFYHQKYEIVIVVDKLLISIFLIKHSRQS*
Ga0068484_109257	Ga0068484_1092572	F016534	VKDFELDFPQFAGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLRSIQFPYLKKKFFKNPLIT*
Ga0068484_109410	Ga0068484_1094102	F035799	VFKTINKSITSILLFMICSIKSGFLLFSDQDVDLFQVAALMDMRQLLDMVLGREGG*
Ga0068484_109946	Ga0068484_1099462	F001392	MKPVINRADIIGGLKSVKLAKLNPQNYQPGVGVSEDFELLLNFKNGNRIN*
Ga0068484_110938	Ga0068484_1109387	F004842	LPNNVRVPPSKVAKERGNKTFDGDIFLRSHQLSIKGNKDATTGVLGTIPDIGAIKKAIKEINFRGVLILSEEINSLTLSKAPLLNNAEETANKPIRVINDGLPNPAKAFSGERTPVAINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTEIRFI*
Ga0068484_111911	Ga0068484_1119111	F024413	PVNETINNPSPNPNIDNPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0068484_113022	Ga0068484_1130221	F013094	MITGFITGVLVAIPTSLVAMKLLNSSLFIDNQELRHINEKVSILIHQLDDYREERLAEKVEVK*
Ga0068484_113022	Ga0068484_1130222	F018383	MEKLTFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQALKLLSGMN*
Ga0068484_113426	Ga0068484_1134263	F031896	MPKAFRRFLKKLPKKIQTIKSHLESFYHPKYEIAVVVNKFLISIIFNKT*
Ga0068484_114032	Ga0068484_1140322	F016534	VKDFEQDFPQFVGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFFGSIQFPYLKKKFFKNPLIT*
Ga0068484_114268	Ga0068484_1142682	F033464	MGIFLPLLLASHEPVHWTIRCEGWKDLASEVRQDEYLDEQSKSDLINYFKTKVEVECDFEP*
Ga0068484_114532	Ga0068484_1145325	F005118	MATQISRAKRLVKMLERLSKQPYLYDEEQNKLIREQLEVAKNELARIQEQTSKGFK*
Ga0068484_114618	Ga0068484_1146181	F101340	STQEARTIDWVNIPLKILPSGASISARSFLLEAFNPADIPAKRNPLGVTLLSSTNDQLESNWLKLFGILIHTNYSLVLKKQVIRLLLIIWIFFKNQKTNKEELV*
Ga0068484_114721	Ga0068484_1147212	F014748	MEIGDRVQTLNTFAPITGEIVDMYKNLVTIADDDAETVDQLLSFHADDLEVIS*
Ga0068484_115033	Ga0068484_1150332	F000802	MTIDEYKDLLLEDEINIGYDVEEDDLPNQYDDESYIDGLLTTGFHAVDASEMFGEEVVGYSLY*
Ga0068484_115231	Ga0068484_1152314	F035799	VFKTINKSITSILLFMISFIKSGFPLFSDQDADLFQVVALMDMRQLLDMVLGREGG*
Ga0068484_115536	Ga0068484_1155362	F016534	VKDFELDFPQFAGCFPRPNPHWIRNASNFQKKQDFNIIVDFFLRSNQFPYLKKKFFKNQHIT*
Ga0068484_115785	Ga0068484_1157853	F016534	VEDFELDFPQFAGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLGSIQFPYLKKKFFKNPLIT*
Ga0068484_116085	Ga0068484_1160852	F016534	VKDFELDFPQFAGCFPRPNPHWIRNGSIFQKKQDFNIIVDFFLGSIQFSYLKKKFFKNLYIT*