Sample 3300005443

Overview

Basic Information
IMG/M Taxon OID	3300005443 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0056652 \| Gp0051941 \| Ga0074258
Sample Name	Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	59601001
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading
Type	Engineered
Taxonomy	Engineered → Bioremediation → Terephthalate → Wastewater → Bioreactor → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	National University of Singapore, Singapore
Coordinates	Lat. (^o)	1.332	Long. (^o)	103.756	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018007	Metagenome / Metatranscriptome	237	Y
F029922	Metagenome / Metatranscriptome	187	Y
F031111	Metagenome / Metatranscriptome	183	N
F051165	Metagenome / Metatranscriptome	144	Y
F064732	Metagenome / Metatranscriptome	128	Y
F070633	Metagenome / Metatranscriptome	123	N
F088944	Metagenome / Metatranscriptome	109	N
F103319	Metagenome / Metatranscriptome	101	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074258_102033	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028	1441	Open in IMG/M
Ga0074258_104274	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	1543	Open in IMG/M
Ga0074258_104276	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	2658	Open in IMG/M
Ga0074258_106238	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2132	Open in IMG/M
Ga0074258_106457	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1523	Open in IMG/M
Ga0074258_109609	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	7233	Open in IMG/M
Ga0074258_112745	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
Ga0074258_116378	Not Available	808	Open in IMG/M
Ga0074258_116961	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	740	Open in IMG/M
Ga0074258_126506	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	751	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0074258_102033

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028

1441

Open in IMG/M

Ga0074258_104274

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211

1543

Open in IMG/M

Ga0074258_104276

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211

2658

Open in IMG/M

Ga0074258_106238

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

2132

Open in IMG/M

Ga0074258_106457

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

1523

Open in IMG/M

Ga0074258_109609

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii

7233

Open in IMG/M

Ga0074258_112745

All Organisms → cellular organisms → Bacteria

1113

Open in IMG/M

Ga0074258_116378

Not Available

808

740

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon

751

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0074258_102033	Ga0074258_1020332	F051165	MTTSFQKTLTVLASVASVLAGVVTIASYLSGEDVTLPPSSATVPSESRPIIVQARAVFVDDDKVYILDYDNNLIEWNESLDVVVL*
Ga0074258_104274	Ga0074258_1042741	F031111	MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNVSCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFS*
Ga0074258_104276	Ga0074258_1042762	F031111	MKNQVLFSIFKNKTRRKKEKSSFLIGKKRCISNIPQNSYYQTIVNFPAAYNLSCYYPQNLPSSQIGKQVKEILKPLNLALIKLLKPQISFSKNN*
Ga0074258_106238	Ga0074258_1062382	F088944	MKNEEFEKELFEIYLDSLEDRFDFDEDKEKIESLTTEAGEANIIVEENNIEPIETQVLGTIRQLSHSGKLINYVPIALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFVLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEELAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKIEGEEKK*
Ga0074258_106457	Ga0074258_1064571	F031111	MKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP*
Ga0074258_109609	Ga0074258_1096093	F064732	MEAEAEAATAAARERCTMPLALSAERHVRFLSSPMAPGQYIAATATRSIGQLDHPEDTKLGNHPFLGLL*
Ga0074258_112745	Ga0074258_1127452	F018007	MFNGWKITNILDVDRCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLNEKQAIPRRYDNENRRTKRTQSRAGVSG*
Ga0074258_116378	Ga0074258_1163781	F029922	MEKRQMDLLPMLSREELYGFGIIDISEMIMSIEHAINYAEGYRFLLLCFGNEGSSDKAKMIMKGLEDYLQIVKDVYRFKVDEKKKRENFLKGVNA*
Ga0074258_116961	Ga0074258_1169611	F103319	MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYINALVDCKVTKVNRDIPEKNTVVSSREFKYSYMLPR*
Ga0074258_126506	Ga0074258_1265061	F070633	GSDTGLRDRAKNRLVLDVSHSQNEEGFVYSVRQHLPLGPKKCTGRFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKVQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG

Scaffold ID

Protein ID

Family

Sequence

Ga0074258_102033

Ga0074258_1020332

F051165

MTTSFQKTLTVLASVASVLAGVVTIASYLSGEDVTLPPSSATVPSESRPIIVQARAVFVDDDKVYILDYDNNLIEWNESLDVVVL*

Ga0074258_104274

Ga0074258_1042741

F031111

MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNVSCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFS*

Ga0074258_104276

Ga0074258_1042762

F031111

MKNQVLFSIFKNKTRRKKEKSSFLIGKKRCISNIPQNSYYQTIVNFPAAYNLSCYYPQNLPSSQIGKQVKEILKPLNLALIKLLKPQISFSKNN*

Ga0074258_106238

Ga0074258_1062382

F088944

MKNEEFEKELFEIYLDSLEDRFDFDEDKEKIESLTTEAGEANIIVEENNIEPIETQVLGTIRQLSHSGKLINYVPIALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFVLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEELAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKIEGEEKK*

Ga0074258_106457

Ga0074258_1064571

F031111

MKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP*

Ga0074258_109609

Ga0074258_1096093

F064732

MEAEAEAATAAARERCTMPLALSAERHVRFLSSPMAPGQYIAATATRSIGQLDHPEDTKLGNHPFLGLL*

Ga0074258_112745

Ga0074258_1127452

F018007

MFNGWKITNILDVDRCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLNEKQAIPRRYDNENRRTKRTQSRAGVSG*

Ga0074258_116378

Ga0074258_1163781

F029922

MEKRQMDLLPMLSREELYGFGIIDISEMIMSIEHAINYAEGYRFLLLCFGNEGSSDKAKMIMKGLEDYLQIVKDVYRFKVDEKKKRENFLKGVNA*

Ga0074258_116961

Ga0074258_1169611

F103319

MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYINALVDCKVTKVNRDIPEKNTVVSSREFKYSYMLPR*

Ga0074258_126506

Ga0074258_1265061

F070633

GSDTGLRDRAKNRLVLDVSHSQNEEGFVYSVRQHLPLGPKKCTGRFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKVQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005443: Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences