NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005405

3300005405: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05



Overview

Basic Information
IMG/M Taxon OID3300005405 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095509 | Gp0056904 | Ga0074193
Sample NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size293152712
Sequencing Scaffolds83
Novel Protein Genes84
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia25
All Organisms → cellular organisms → Eukaryota10
All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia → Trichomonadida → Trichomonadidae → Trichomonas → Trichomonas vaginalis17
All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia → Trichomonadida → Trichomonadidae → Trichomonas → Trichomonas vaginalis → Trichomonas vaginalis G36
All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia → Tritrichomonadida → Tritrichomonadidae → Tritrichomonas → Tritrichomonas foetus4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available13
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctg6c781
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → Syntrophomonas → Syntrophomonas wolfei1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico
TypeEngineered
TaxonomyEngineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationEspanola, New Mexico, United States
CoordinatesLat. (o)35.9918Long. (o)-106.0796Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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