Basic Information | |
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IMG/M Taxon OID | 3300005272 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045398 | Gp0051777 | Ga0065703 |
Sample Name | Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 |
Sequencing Status | Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 54412912 |
Sequencing Scaffolds | 17 |
Novel Protein Genes | 19 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 7 |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Switchgrass Rhizosphere Microbial Communities From Michigan, Usa |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
Location Information | ||||||||
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Location | Central Sands area of central Wisconsin | |||||||
Coordinates | Lat. (o) | 44.168815 | Long. (o) | -89.633871 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001244 | Metagenome / Metatranscriptome | 738 | Y |
F003709 | Metagenome | 473 | Y |
F005485 | Metagenome | 399 | Y |
F005849 | Metagenome | 388 | Y |
F010058 | Metagenome / Metatranscriptome | 309 | Y |
F011708 | Metagenome | 288 | Y |
F019698 | Metagenome / Metatranscriptome | 228 | Y |
F023420 | Metagenome | 210 | Y |
F029836 | Metagenome / Metatranscriptome | 187 | Y |
F032964 | Metagenome / Metatranscriptome | 178 | Y |
F045906 | Metagenome / Metatranscriptome | 152 | Y |
F060119 | Metagenome / Metatranscriptome | 133 | Y |
F061688 | Metagenome | 131 | Y |
F080405 | Metagenome | 115 | Y |
F083149 | Metagenome / Metatranscriptome | 113 | Y |
F085832 | Metagenome / Metatranscriptome | 111 | Y |
F086934 | Metagenome | 110 | Y |
F103766 | Metagenome | 101 | Y |
F106005 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0065703_1018807 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 7049 | Open in IMG/M |
Ga0065703_1019195 | All Organisms → cellular organisms → Bacteria | 3606 | Open in IMG/M |
Ga0065703_1019252 | All Organisms → cellular organisms → Bacteria | 3363 | Open in IMG/M |
Ga0065703_1019588 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2703 | Open in IMG/M |
Ga0065703_1020012 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2160 | Open in IMG/M |
Ga0065703_1021011 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1439 | Open in IMG/M |
Ga0065703_1022047 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1016 | Open in IMG/M |
Ga0065703_1022744 | All Organisms → cellular organisms → Bacteria | 848 | Open in IMG/M |
Ga0065703_1023054 | All Organisms → cellular organisms → Bacteria | 778 | Open in IMG/M |
Ga0065703_1024200 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 607 | Open in IMG/M |
Ga0065703_1024295 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 606 | Open in IMG/M |
Ga0065703_1024321 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 608 | Open in IMG/M |
Ga0065703_1024598 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 587 | Open in IMG/M |
Ga0065703_1024930 | All Organisms → cellular organisms → Bacteria | 558 | Open in IMG/M |
Ga0065703_1025190 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 545 | Open in IMG/M |
Ga0065703_1025591 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola | 520 | Open in IMG/M |
Ga0065703_1025618 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus | 505 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0065703_1018807 | Ga0065703_10188078 | F023420 | MNKFLFSYAMTFVLLIATPYGLAADDAIDRWATAAGGRDKVAAIKTIYREAELEFGAYKGTIKVWHTADGKYRKEEKIGDLSSLEIFDGAKGTIKESDAPSRPMTDAELEISKAKRFANANAMFFAFFPERRHGSVTTEPDGTIVLKPEGGVEWRVTLDPQTSLPKTMVHKEGDRIITVTFDSFETVDGIKFEKEIHRSAGGPAGAAIRFTKTVINPPTDPALFSTQ* |
Ga0065703_1019195 | Ga0065703_10191953 | F061688 | MGYRFHDTAHLEKRARERGFSVEQAKVTVNDASSILKTPIRKGNHGGLIQLFFRAFESRILVVVAEVKQNECWIITGYWEEQH* |
Ga0065703_1019252 | Ga0065703_10192523 | F003709 | MPDAVPAARRSRASVVWMIIGGLSAVAPLFGPLGTTFQYLADFFAERPQSVQGPGVGFFVELLALIVCPVGLLVFTIALVVFIRSRK* |
Ga0065703_1019588 | Ga0065703_10195881 | F005849 | GGYFNTWGKPKVLLDDPRFNRNYDFVFSGFEKALIGDVPAFEEGAAKLDALLSHLEDNYKTITIVTHGKGGLLAMRTLLNRAKDFPKKQPYRIHRIVMFSPPTENISLTAHPEIAKQLADQGADIVQIQTSTEAELAKVKEDLKAMRNPQDPPAHARLEAFTRDVSEHLYVINAEHDELVDVGPNGEKIVSEGIRKISELPTIGPPRLVTLRYADIGGTEEDARQKKSGVKNPAYAHRILVKMGDQDDFSFFDRFEQLLFDRIGVPPRSLSANVEQIRQSAFDRINSTIFEMNRFVVDKEPMVGLCWRNIADAVAAKLKNVPEPQKQKQTEDLVKQIYYVYIVLDQYAQLDDLRNRGYMSPNDPKIIEWQSSNLPNLIGSDVGKWMLENKLMDYYSEQMIKDLHQALERVEKPAVSAQ* |
Ga0065703_1020012 | Ga0065703_10200123 | F080405 | VRDKESTAITITLPIALDRALQELADQKYCGNKSAAIREVLYKEAGMKGSLRLNETTDSAAVPKAERRAVKYGSRRRKSRK* |
Ga0065703_1021011 | Ga0065703_10210111 | F029836 | MKRLNSFAVVLVLTVGAFFFGTANQSVAGQSEYYSRDGDGVLRMKHSPVLGINIPIAVWIDGRQAGAFTKGHVYQRHLAPGRHDLYASRPGQLYSSFYGTLDVQAGVTYSFVVKSTPNQIYLVPVGYVD* |
Ga0065703_1022047 | Ga0065703_10220473 | F045906 | MKKETDMTETTVKPYRDPVPGRGSIELRRTAAGVYSWVITIWTDAIVTDTHLLGMVDSVERVDDELRKRYPESGGAEKG* |
Ga0065703_1022744 | Ga0065703_10227441 | F060119 | MAVVESQVAATELENVVDTIRVLFERDDRFYANIKKRNVEKISNRQMRVPLELRPGGSFQYFNPDGGDLGRGGGPTMDKAVLNSVFLSENIEYTKLTQWATDDARKAIVNAVRRLTATALDELRRQLDSQCMQAGDGVIGIVTSDTPAGGSNVISCTTDGFGVRLMRYDQTIQVFDSTLATNKGSGKITGYDVEN |
Ga0065703_1023054 | Ga0065703_10230542 | F032964 | YEEIGQLVSIINKGAKEEALNLYFNDNMRLAGAPTKPSFNWDKTRIDFILDEVWGRGEILPIGFYTTDGRKIFEIRGPSGGVATAEIFYMVVGMQLYVNNPAACSYIDNLAVPVGY* |
Ga0065703_1024131 | Ga0065703_10241311 | F106005 | RLANAEQKIEIITRNSAGKAVVQEFEPAQEAGPPEKAAVESERIDDEINLF* |
Ga0065703_1024200 | Ga0065703_10242001 | F086934 | MREIVFSTARIFVNDDLEKFHQRQMATDSHYAAARHLLELGEAVALLREEARLTRGELGKRLRVRARDIALVEEETPLAPAGLLEAALSLLVQLSLTKAKQPAAVLQSIRTIRHFRPTLAPV* |
Ga0065703_1024295 | Ga0065703_10242951 | F010058 | LKGKFPLLMRSSLNASDRLVRCQPLVSDSEASHFANKCEQVWREMSRKTAPKRYFTTGDIADYTGLTQGQISETATDPNSWLALFVVCAGNGEHCRFVDPTGWLLKLWCGFRRVKRSFPNATRNQVFKAFRVIGLEKGKPRRRLLTQREAGELEPPKPRRVPQLAAM* |
Ga0065703_1024321 | Ga0065703_10243211 | F011708 | MNCPACYSEIDDRSYRCKECHRITSYRRFCWRYRYLVFVLVALIGYWTVPGLVKRWFARDYNNLPLGALVSDQTTLGWLGLADKGWFCEEPHYKGSLLHLRHNVFQAKDVIVFVHGFSGGYFNTW |
Ga0065703_1024321 | Ga0065703_10243212 | F103766 | FLSLYARMDNLRSRGVLSPNDDMIVTWKRSWLPNLMQSELGRWMLDNNLMEYYSDTMIKDLREAAAPVAENATLPKR* |
Ga0065703_1024598 | Ga0065703_10245982 | F083149 | SLVPTSPVSAFYKGESQGKKLPGDWKEQRFLPDSPAHEMLGGSWGFLFSQSHVVVVTTPSVSDATSSAVGKIANHGSI* |
Ga0065703_1024930 | Ga0065703_10249301 | F001244 | GATEVAQRLAAFPFTPPDVKLKEKEPLSSSNDWFTKHDKNKIDQLGSLDFYASSGPESVGVVPKLHNTSAGIEIYQLPPTLTKETFEKTEGPYRSGVTKKYSNKRSGEKVAKFKAGTMAQSGLACFHMSRLLGHLVEVPPATYRTMGLQEFQKVGDQARTTGHPSCTEAWAELRAMAKSGSSKLIL |
Ga0065703_1025190 | Ga0065703_10251901 | F085832 | AYLYDAGAHLAAVWAPALEPSDATDSRFRDLIANGNQFKIDDLTLRNAQHFGEGFLIDRWGKIEKNRRKRDRIARETAMNALRRRPLQIAGLALKTYMGYWGIASIQSYAREDLGVGELSDEQLKVFAEKFRFTTVKLLPVQPFSLLQRYFLGGWPYYFIVVVSPLICALAMWVSRQRAF |
Ga0065703_1025591 | Ga0065703_10255911 | F005485 | YRCKSCRRVTSYRRLFWRYRYVALIVAALIGVWTIPGLVNQRFTRGYDKLPPGALVSDETTMGWLGLTDKGWFCVEPHYKGNLLHLRHKVFQAKDVIVFVHGFIGDYVNTWGKPKVLLEDPRFNRNYDFVFYGFKTALFGDVPAFDEEAARLDRTLTHLEQDYSSITIVTHSK |
Ga0065703_1025618 | Ga0065703_10256181 | F019698 | VPSIGGGMKLIRTLRAVEDEGVCSGVAKGDSDCSGELEEEGEGDSPRIGEGAGTGDSCAAAIATQARQKTTVRIWKQRSAIRDLSIISPVHVRKNVIPPFAVAQKFFIEIICDKLIVQTVEASKVIDRALSGVFARSPGFH* |
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