3300005043: Mid-Atlantic Ridge North Pond Expedition - Sample 1382A

Overview

Basic Information

• IMG/M Taxon OID: 3300005043
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114576 | Gp0113271 | Ga0071100
• Sample Name: Mid-Atlantic Ridge North Pond Expedition - Sample 1382A
• Sequencing Status: Permanent Draft
• Sequencing Center: The Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 215164140
• Sequencing Scaffolds: 34
• Novel Protein Genes: 46
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	16
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Subseafloor Aquifer → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Alt. (m): N/A
  • Depth (m): 90 to 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000820	Metagenome / Metatranscriptome	878	Y
F000935	Metagenome / Metatranscriptome	828	Y
F000948	Metagenome / Metatranscriptome	823	Y
F002278	Metagenome / Metatranscriptome	575	Y
F002832	Metagenome / Metatranscriptome	527	Y
F002870	Metagenome / Metatranscriptome	524	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0071100_1015870	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2083
Ga0071100_1023750	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1621
Ga0071100_1040395	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1166
Ga0071100_1044843	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1091
Ga0071100_1051680	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	999
Ga0071100_1052385	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	989
Ga0071100_1053530	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	976
Ga0071100_1056615	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	942
Ga0071100_1059723	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	911
Ga0071100_1072359	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	809

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0071100_1015870	Ga0071100_10158702	F044539	MSCLPPNANPSKWNRNYDNLTDKDRQEMLVDEIFALYLYRMSNRINQSYYKTVLAYVIFFRECLNEYGWGKKIESEGIRLENNPELKLDIETRQFCLVNNAEHAPEICNEFVTVYMEYKKSIYDIPKHDQIDLTINLCHWLFECQFTCSKLTMIA*
Ga0071100_1023750	Ga0071100_10237501	F056056	NMLFGIALDELEDNEEFKKNVAIPYFKDIYKDLVAQSDDKNKGINKITMLTYSNLPGIIGERFVSVLDLSKTEYIDLREFVHGFFKVYYSNLETKIKLSFDM*
Ga0071100_1040395	Ga0071100_10403952	F000820	LLTDKPSPITTALAQKSDADNLSTLFDANVTRGALKNLLTDKPAPITVALAQKSDDDNLSTLFDANVTRGALKNLLTDKPAPITVALAQKSDDDNLSTLFDANVTRGALKNLLTDKPAPITTALAQKSDADNLSTLFDANVTRGALKNLLTDKPAPITVALAQKSDADNLSSLFDSNVTRGALKNLLTDKPAPITVALAQKSDADNLSTLFDANVTRGALKNLLTDKPAPITVALA*
Ga0071100_1040983	Ga0071100_10409833	F000155	MKFATLLVATAAASRVNTETQVEDELLAQLSSTLTSALDSEARGDSDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0071100_1044843	Ga0071100_10448431	F000948	VSVPIDEKRALTLKVSPTYTLDDVQSVTLKSFRKIVGYDTFESIRKKNRNEGKDTSDYYNVTVSMMVRRKPVEAAAAPARDPYAPDGAPSLASTLDKGFPYDD*
Ga0071100_1046358	Ga0071100_10463581	F000055	MNNIYAHYAVEVTNAAGQKTGQRVLYKDGAQKACAEILLVTKQVSEAKMEQYMAEFFPRTWAKFDLNNAGEIDVTEAHTFMRSLLGRLNQFVLAPGSLTDIKVE*
Ga0071100_1049300	Ga0071100_10493001	F000155	MKFAVALIATVAAVDFETMNEDELLAQLGTTLQSAQMSEMRGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0071100_1049966	Ga0071100_10499662	F000155	MKFAAISALATVSANTYDFMGEDELLSQLSSTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0071100_1051680	Ga0071100_10516801	F002870	MKFAKFTLAAVMISEASAIQNKEAATLVSQALAMTASGSQASAHLESALEVLKSDAQVLDSHSQTVSVPIDEKRALTLKVSPTYTLDDIQSVTLKSFRKIVGYDTFESIRKKNRNEGKDTSDYYNVTVSMMVRRKPVEAAAAPARDPYAPDGAPSLASTLDKGFPYDD*
Ga0071100_1052385	Ga0071100_10523852	F007607	EDISMKGDKFHYVQRPSKQRLFATGMNGDEDLGEDIKMHGNPYHYVQKPSKQNLFATGMNGDEDLGEDISMKGDKFHYVQKPAQQILFATGMNGDEDLGEDISMKGDKFHYVQEPSK*
Ga0071100_1053530	Ga0071100_10535302	F030104	MSFDDDQDEVIEFIDTSFFYFFTIIVSYLIYKYSIHYFAFLEASVADGRTVNFITKQFFKDFLNTFSLILRFYILLFRINVYDTLEDFFDTYYIFVGDFDDDEYLNELFLSIHGTLFFSLDNNDDGSFLFEDENDFFNDFYFLYFII*
Ga0071100_1054843	Ga0071100_10548432	F096054	MDLTPYEEDDDETLHRKLVAAKIARKRAEEDLKLLSNRINLLKQEEVRAYKKID*
Ga0071100_1056615	Ga0071100_10566151	F011815	LEQINKDLSFGISFSQTKRNDHARELCTKVSSAIKDYSSKILQKIEAGPSETLTEQNEHNLAAIIYYDVQVQDAMKRLGVADDGELVLAVNRLKSLQKLYLFEQKGGENYLD*
Ga0071100_1059723	Ga0071100_10597231	F002278	DDKKNATAAAFGDEKPCAAAAFTEIPDGEDKLHFFDFDNAKMLYKGDWNAYKKTRPHDNDCSIAESDNWKGAQQCVESWECRGARMCERGGWCSGFDGCEGSPLPTQAPGVSNTH*
Ga0071100_1065328	Ga0071100_10653282	F000155	MKFAVIALVATVSANQYDHMNEDELLVNLSSTLSSALASEARGNEDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0071100_1067474	Ga0071100_10674741	F009292	YFSSMDLQLTRRDYFYFMRFYSGLSLRETLNEQGAFWTKVEKKATLIQTEVVEPKKTAPVATSLMATKAKSQDDFDKYSQAVDVPIDEVKAITLKVSPTYALDHVESVTLKSFRKVVGYDTFNSILKKDRDEKKDIADYYNVTVSMMVKRIPAANAAPALKDPYDGTKTLAQSLDKGFPYDDGDNTTDDMTPNWKNQKSVSATNVGKLNGENITKEALVNLIKDTDSPITQGLVMLEKSDSDGLFQLMDANVTRGNLKNLLTDKPAPITVALAQKSDSDG
Ga0071100_1072359	Ga0071100_10723591	F018867	MKNLLTDKPSPITVALAQKSDSDGLFKLMDANVTRGNLKNLLTDKPSPITVALAQKSDSDGLFKLMDANVTRGNLKNLLTDKPSPITVALAQKSDSDGLFKLMDANVTRGNLKNLLTDKPSPITVALA*
Ga0071100_1073847	Ga0071100_10738471	F000075	MKFAAICILATVSASQYDSMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0071100_1075674	Ga0071100_10756743	F079715	MNNAHRDQHVDDRQAKDERWPNMYGDLNPQPDVTKDMVAGADVRDIK*
Ga0071100_1076314	Ga0071100_10763142	F039652	MKKKKLHYLWSLKDNGIIDRAMVSFSITSKEMGETPYALFGG
Ga0071100_1079318	Ga0071100_10793182	F029460	LKENKCAYFQFLSLYKSQGLGNNSDGILGLSPHKDMSKKKLHYLWSLKDNGIIDNAVVSFSVTSKEMGDSPYALFGGFNSS*
Ga0071100_1080298	Ga0071100_10802982	F060330	IALEFIGLTFFSFLMGNMSGIFGQKDKFDDLIEDKLDSLNMWIKKIEKSNAPYHIQPTLYKDIRKYAEHAFLYDFNLLIEEFDFFQ*
Ga0071100_1085340	Ga0071100_10853401	F046407	AKMEQYMAEFFPRTWAKFDLNNAGEIDITEAHTFMRSLLGRLNQFVLAPGSLTDIKVE*
Ga0071100_1087037	Ga0071100_10870371	F019023	FQAVGPEQVSPHYETLSRSRRGILFMAAYVGSITTISRFGGWEHNDWLRAMIWHHEYLIALYVGFIEIRHFTYFLGPKFNTFYNTYTKYEF*
Ga0071100_1093851	Ga0071100_10938511	F022421	MHEGPDKETVWHLSQQLWRWLKWHDGCNVMLADKSEAGWHYIPDRGFDVECNTRHGEFIPEHVHHNYLHSDVYQQSRDARQVEGASSG*
Ga0071100_1096562	Ga0071100_10965621	F002832	KLIVKKKMKYAVILALIATVTASTVEQKSVHRYTYEDIRGQELKCKADRNREWKYDAATNTYDCPLQAYD*
Ga0071100_1100130	Ga0071100_11001301	F007607	MNGDEDLGQDITMKGSPFHYVQNKFATGMNGDEDLGQDITMKGSPFHYAQRPESNNLFATGMNGDEDLGQDITMKGSPFHYAQQKFATGMNGDEDLGQDITMKGSPFHYS*
Ga0071100_1100935	Ga0071100_11009351	F056056	LIDDKILNNEEFKKNVAIPYFKDIYKDLVAQSDDKNKGINKITLLTYTNLPGIIGERFFAVLDLSKNEYIDLREFVHGFFKVYYSNLEAKIKLSFDV*
Ga0071100_1102022	Ga0071100_11020222	F006114	MNAQQSLKRLSTSFSSKPNLDKVSAMAQKLGIPMTPELMQLGTNEAISNALVEIAVGMGKSEEEIGASIE*
Ga0071100_1104833	Ga0071100_11048331	F042366	MKYLAIVALLGLTSAIRLRDDSDSLGRNVGKTVHQDMHLSGYNGADEDDIMDNVYGRFSSEGQTPSGHKTGQKLLMKDDAKLAAGTVLEAAHKLTPAEVPGYLSANFESSWN
Ga0071100_1106876	Ga0071100_11068762	F031108	DEDEIMDNVFGRLSTEGRTPSGHKTGQKLLMKDDAKLAAGTILEAAHKLKPDEVPAYLTANFENSWNHFD*
Ga0071100_1109579	Ga0071100_11095791	F000935	ALLLVGAISSTEAIVSENQEKLYNLMQLQGADCPEPLEISEDELHYQLGEFSRNFQMEHWNNAMKINAGLGKTGHNPRFAVTTKELYDKSFSFPKVRNYNYAVENMNELEHYEDNLNNNISNSQHLKKFIEVAKKVRANLNDKYDIGFIDPGVEGDW*
Ga0071100_1115619	Ga0071100_11156191	F000948	AGSEASLHLENALSSMKGDAEILESHSQTVSVPIDEKRALTLKVSPTYTLDEVNSVTLKAFRKIVGYDTFESIRRKNRNEQKDTSDYYNVTVSMMIRRKPVEAAAAPARDPYNPDGAPALAASLDKGFPYDD*
Ga0071100_1118053	Ga0071100_11180532	F000088	VAGVTFAPPAGGPYASDTDHLSNECYGGDEDEIIYDVFERYRVEEKNPVGAGTGIWKLPKWSGPQWAADVIHKFHVMDDDKVEAYVKANFDNFWAKYDNNGTGEIYESEGETFMRALLGPNNRFRLAPGALSDMDSAD*
Ga0071100_1120124	Ga0071100_11201241	F022077	EKAVKHQKHVMLFWESKLIHKLRGKTNVPNLHYVGDEKTDEGKHFHVMVMDLLGASLEDLF*
Ga0071100_1126900	Ga0071100_11269001	F020013	REYSEHTAHRVFRVANYMWMMMFHMYGTMRPIGSRFWGSGNGPLNYTGLYCYFFATIMVLGRCRFEKSRDQYMFNTQDGAEFWFDRYNMMFPPNYLHTRMSAHYIEISNIFFNEMMKKYIVARKQLLDDRDRFSAEEKRTRFITNAQYIYEPFQNDTDAIQALRVSGEF*
Ga0071100_1129240	Ga0071100_11292402	F054346	MEGFEHSWAHRYGQMPRSVISPEGINPIGDMNLKAGLFERLYNALHREIASSNQKATPSTYADWIIGYHREANW*
Ga0071100_1135896	Ga0071100_11358961	F013190	MSLSHSNFSNAEFGQEISISATCEGSIPLKVIPSAEATKVASSTSVDMAEIIAFRSSEPLVLAENTKTQSHVLNVRVKSYA*
Ga0071100_1136991	Ga0071100_11369911	F005505	IYVFTYFFFHHFSGATVNYFFFER*NISELDEIRFYGVSPHWYFRSLMGILVISPTHYVGLM*MGLFFILLAFLPIFYNLFNTYHKYVSIVPMQNSLLQTVFFILFIMSLYCSASILPCGRYYYEPEGGYVGNP*VKFSYQFIYLYLG*IIHHLDLFDHYIFQFTQLFLKKYKFFSNKILKH
Ga0071100_1137195	Ga0071100_11371951	F000055	SNVENVSAIHLERKKKKEEPAPTAADTPSSGYFGADEDDVMNNIFSHYAVEVQNAAGQKTGNRVLYRDGCQKACAEILLVTKQVSEAKMESYMSEFFPRTWAKFDMNNSGEIDNSEAHTFMRSLLGRLNQFVLAPGSLTDIKVE*
Ga0071100_1140354	Ga0071100_11403541	F074570	MDKLLFRNIYNARFVICGFTVAHLAYWNLLAKNRIYADVFGIDGNGGKMLKIITDLTDEEMARLKYVRRLAWHWKGSRTMYQGVETISDQELADRGIELP*
Ga0071100_1141711	Ga0071100_11417112	F083237	MNDAENTKKMFKKVQSSVSQMVDLFKRSKFFLCVAQKMNYEDGIVFTENNIVPYLAELEEYISSLITYTAFKRDEPNAAICSI
Ga0071100_1145530	Ga0071100_11455301	F039652	MSKKKLHYLYSLKENGIIDNAVVSFSVTSQDMGETPYALFGGYNSS*
Ga0071100_1150734	Ga0071100_11507342	F056056	LVDDKILNNEEFKKNVAIPYFKDIYKDLVAQSDDKNKGINKITLLTYTNLPGIIGERFFAVLDLSKNEYIDLREFVHGFFKVYYSNLEAKIKLSFDV*
Ga0071100_1151411	Ga0071100_11514111	F000088	LTSMKYTVFLALVGAISAIKLTQQESFAPPSGGPYASDTDHLSNECYGADEDDIMYDVFERYRVEERNPVGAGTGDFKLPKASGPQWAADVLRRFHVMDSSKVDAYVAANFDNFWAKYDNNGTGEIFESEGETFVRALLGPNNRFRLAPGALSDMDSASLHIQNEFSKTPD
Ga0071100_1153563	Ga0071100_11535631	F000155	AAVSANQFDSMNEDELLVNLESSLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*