3300005002: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um

Overview

Basic Information

• IMG/M Taxon OID: 3300005002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114451 | Gp0111482 | Ga0068518
• Sample Name: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um
• Sequencing Status: Permanent Draft
• Sequencing Center: Chunlab, Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117855606
• Sequencing Scaffolds: 33
• Novel Protein Genes: 36
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria	4
Not Available	14
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Nanji, South Korea
• Coordinates
  • Lat. (^o): 37.3132
  • Long. (^o): 126.828
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008498	Metagenome / Metatranscriptome	332	Y
F011936	Metagenome / Metatranscriptome	285	Y
F014126	Metagenome / Metatranscriptome	265	Y
F019998	Metagenome / Metatranscriptome	226	N
F022365	Metagenome / Metatranscriptome	214	Y
F024534	Metagenome / Metatranscriptome	205	Y
F025488	Metagenome / Metatranscriptome	201	N
F032247	Metagenome / Metatranscriptome	180	Y
F032274	Metagenome / Metatranscriptome	180	Y
F040068	Metagenome / Metatranscriptome	162	N
F040720	Metagenome	161	Y
F042865	Metagenome / Metatranscriptome	157	N
F046373	Metagenome / Metatranscriptome	151	Y
F046955	Metagenome / Metatranscriptome	150	Y
F049632	Metagenome / Metatranscriptome	146	Y
F054846	Metagenome / Metatranscriptome	139	N
F058997	Metagenome / Metatranscriptome	134	N
F074867	Metagenome / Metatranscriptome	119	N
F078294	Metagenome	116	Y
F078624	Metagenome / Metatranscriptome	116	N
F078696	Metagenome / Metatranscriptome	116	N
F082613	Metagenome / Metatranscriptome	113	N
F090323	Metagenome	108	N
F093751	Metagenome	106	N
F095393	Metagenome	105	N
F095878	Metagenome / Metatranscriptome	105	Y
F096902	Metagenome / Metatranscriptome	104	Y
F101016	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068518_1000236	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	11785
Ga0068518_1000406	All Organisms → cellular organisms → Bacteria	8142
Ga0068518_1000591	Not Available	6325
Ga0068518_1000764	All Organisms → cellular organisms → Bacteria	5382
Ga0068518_1001794	All Organisms → Viruses → Predicted Viral	3379
Ga0068518_1004814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1985
Ga0068518_1007497	Not Available	1582
Ga0068518_1008333	All Organisms → cellular organisms → Bacteria	1501
Ga0068518_1008526	All Organisms → Viruses → Predicted Viral	1483
Ga0068518_1009703	Not Available	1386
Ga0068518_1010341	All Organisms → cellular organisms → Bacteria	1344
Ga0068518_1010822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1314
Ga0068518_1012323	All Organisms → Viruses → Predicted Viral	1224
Ga0068518_1013302	Not Available	1175
Ga0068518_1015028	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1102
Ga0068518_1021592	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	914
Ga0068518_1021693	Not Available	912
Ga0068518_1023152	Not Available	883
Ga0068518_1023882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	869
Ga0068518_1023946	Not Available	869
Ga0068518_1026009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	833
Ga0068518_1028658	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	795
Ga0068518_1031687	Not Available	755
Ga0068518_1032573	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	744
Ga0068518_1036884	Not Available	699
Ga0068518_1053060	Not Available	584
Ga0068518_1058228	Not Available	557
Ga0068518_1059729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	551
Ga0068518_1061128	Not Available	544
Ga0068518_1062201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	540
Ga0068518_1062428	Not Available	539
Ga0068518_1063243	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	536
Ga0068518_1069012	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068518_1000236	Ga0068518_10002365	F022365	MPKRDNTSIADMQPDELTELKKLVKEFVTRMTNIENEVSLLKEDRKALIEEFGTKLDLRVLNAALKVAKIKSSVDRKDTFDMFMEVLEEEAT*
Ga0068518_1000406	Ga0068518_10004061	F096902	MSGGSLDYICYKLDDVIDTVESRAKTALQKAFAAHLRDVSKALHDLEWVFSGDYSDGDEVEALSKVVDKKMELEASTNDARIALKQLQDVLAALDA*
Ga0068518_1000591	Ga0068518_10005911	F008498	VANVTYKNQPAIDKTKGNVPLAGTSHIYRVKKRLWNDSIEDVLRGLFIGKTLHVCCGKSALGDVRVDADPENKPDIVCDAADMTACVADGAFETVLCDPPYNGQFQWNHDLLHELARVATKRIIFQHWFMPANPDGRYKKAQERFALSDVLVWQPKTYFGRVQVVSVFDAL*
Ga0068518_1000764	Ga0068518_10007642	F078294	MIILNTDSQIVGETQSTLWSILQSGPVNALVVIKNSGVNTMNYRFQEYNGSAWVDLGASGSDFYNTLSVNEVKTLKLTSAYPQVQMVGNASGGAFLEFSVTRYFNRASGGSIPILNL*
Ga0068518_1001794	Ga0068518_10017941	F040068	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPNPRPIGQPVFTPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVVSGLVPTVAMSGGVHTISVLITDDYGNQQTFSFQYEQGVDLGFNFITGEYFYFIDDVQFDFIG*
Ga0068518_1001794	Ga0068518_10017945	F025488	MAYVSRGFIPQTSLASNLGFTRPMYIPAGNATATALYDIVKVSTSGSTADTAGVPAGLMGCVRVDGKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSVDTTTGTSGMQISSATLAGSPGMFRLQQRSFRVDNAAIAGTNTKWLVTFNVHQFKATA*
Ga0068518_1004814	Ga0068518_10048142	F090323	MSLETEISQLTKAINELNANFERFFNSQSAPTPPQPVEPEQETFLPEVAKEAPSMTRESLQTFCLEAVKRNAANRDIIKSIMLNNFEARKTGDLADNQINLCYSMIAEATKD*
Ga0068518_1007497	Ga0068518_10074972	F019998	VGTTTAASLDYAASANAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTKIAETQVFVWPPTAYANWAIGYSFERRYQDVDAGVNSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG*
Ga0068518_1008333	Ga0068518_10083332	F095393	MNHKAEYEAIKKQIAECEQALKNRCIECSNFNKKKGECLKHGFVPVEFVYQKNECEGFDYLPFN*
Ga0068518_1008526	Ga0068518_10085261	F054846	MTTEKLNLSELGLGDNSQAAVNEKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0068518_1009703	Ga0068518_10097032	F078696	GRAWLKLWSSAVIYLNIQPSDAWQLTPSEFWSLWDMHLSKMEVSTGKAYTKPMSKTEFDELNDYLDSIHGDN*
Ga0068518_1010341	Ga0068518_10103412	F046373	MINSFIAESHCFVVAHNNVDDYRICELDVGNELSSLLPYFEQFATYELALTRVPVEFRPNDEQL*
Ga0068518_1010822	Ga0068518_10108222	F058997	MIIYKGREMTVREACKLMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG*
Ga0068518_1012323	Ga0068518_10123232	F054846	MTTENLNLSELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTASIFGKQRNDPDFFSRDEN
Ga0068518_1013302	Ga0068518_10133022	F046955	MAAPRQMTAKTLNALKGWPQPAAVDFHTEFADTITDEVLPGSVVHLNSAGQYELGVGTDSVMPLFMFNGSNDPDVKNEAGDPATEKGVWVPINPTGQAMALVAIGAYELVSTAFVDGSYEPNDPLTSAKTGGSAGLLVGGTLYTDMIVGIVSRGVVDNGYG
Ga0068518_1015028	Ga0068518_10150281	F032247	MTVDDAIFNLETYGRHMGNRFIAINHDKSCELLLKNAVIVLESAGMIERDSVKAWAHCNVKIINKPVPKVDYTTGL*
Ga0068518_1021592	Ga0068518_10215921	F024534	LKPSHLERIEALPDVFMLASLVQFKYIQDISEPNKTNFKVSMAGGHYTFGSPNQYEEFLDKYLTWLETRKF*
Ga0068518_1021693	Ga0068518_10216932	F042865	MALRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVDPENTVRANKSCLYIQSTGGTAVLWFNPNGNGSATGWIVK*
Ga0068518_1023152	Ga0068518_10231521	F078624	MKLCIHVRPRDDGQGWAIDVYDGRRAWTKTNLGEQPLNKSEAHRLAHKLRDPKFYTARTKRAVNSRGAL*
Ga0068518_1023882	Ga0068518_10238823	F024534	MFINRGLEVMSNKENRIKSLPDVFMLASGLVQFKYVQDISNANDVNFCVGMAGGHKAFGTPSQYDEFMDKYLTWLETRKS*
Ga0068518_1023946	Ga0068518_10239462	F040720	QLKTAKEFIERYGQGYSTEDLMQMYAEDVAKRFAAECVNEALGNKMEVSNSLHHAIEGKYKSIIWENEG*
Ga0068518_1026009	Ga0068518_10260091	F074867	MSNRGIVELTLNGEVFELHPTFENLDKLETVLNKGAVGFLQNDLSSGMFKTGDVVSIIQVCAIPPRGAKRPSWWNREGIGRAVLHEGLLNCTRVVVEFLTKALTAGSETDIKTVGADEDDEKK*
Ga0068518_1028658	Ga0068518_10286581	F078624	MKLCIHVRPRDDGQGWAVDVFDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTSRTKRAVNSLTVERGPKGGAA*
Ga0068518_1031687	Ga0068518_10316872	F096902	WGFIGLDVNVMRILIMRWIMSGGSLDYVCYKIDDAADSIEARATTPLQKAFAAHLRDISTALHDLEWVFSGDYSEGDEVAALRKVVNKEMELNSATEQAEFALKQLQSVLAALDA*
Ga0068518_1032573	Ga0068518_10325731	F014126	AMQFASINESRIDFRISEYLTIGLSVNNKGSFFINEDELNEETSLENLFSSPIVPIVNRNFYPLLVEVANNIDSFVELDVVKRVSNLINPTLEVFAFNYKKNTYIYRCDERYGNSFFKYESALELVNEVRNELNYDLTFFYDNKLSKEIVAKKQLEDRERQISLKLEDVNFNISKIKGSIQILGSTNVLKEALLNLEKRRESLGLDLLALKELQVKEIVKL*
Ga0068518_1036884	Ga0068518_10368841	F093751	KQGGYMKTVSEMVKALGEIKYVALVLQVSPRTVDYWIASNQISRASRLDFLNMMKEAGYKMTLKELNDLQPTKKEVSK*
Ga0068518_1053060	Ga0068518_10530602	F082613	IYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLTALTASAFDTIDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0068518_1058228	Ga0068518_10582281	F032274	MQVSFDFTEQTEIVKREKRKYLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKQMPIAVEKKIKGKICVVPSGLKTDEDIISRVRELRKQASKIGKELDALFFKTNPEWAKFYGYID*
Ga0068518_1059729	Ga0068518_10597291	F019998	YEVGTTTAASLSYAAPVDAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTKIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVVFGVRR*
Ga0068518_1061128	Ga0068518_10611281	F095878	MEVTRKGWTGRRDEIGSVPKFGEPAQRVQSPPGQSEDPQAGSEPCDGAGNRGGDT*
Ga0068518_1062201	Ga0068518_10622011	F024534	LKPSHLERIEALPDVFMLASLVQFKYVQTISEPNERNFIVGMAGGYEVFGAPQDYDAFMDKYLTWLESRK*
Ga0068518_1062428	Ga0068518_10624281	F046373	MINTFIADAHCFVVAHNNVDDYRICELNDGNELSSLLPYFEQFDTYELALARVPVEFRPNDEQL*
Ga0068518_1063243	Ga0068518_10632431	F049632	MASYNPNNQQGNFQYVNSAVENKGLFSRILRNLSSWGMNYDDMIMRNQVGVGINEDPYSQQGNSMYDFFSRRAVASVLNRKSIPYLDRSY
Ga0068518_1069012	Ga0068518_10690121	F011936	YWRVFARRRRIRGLELSEQQHETRLQSLENGYTMLSRDYTRLNDAIVKISESLVQLVVIQEQNKSIMQCIERQSSTIDNLDRRLDTIEVHMPALVELRTWALTGLGLIASAVLMALVALVIK*
Ga0068518_1070336	Ga0068518_10703362	F101016	MADVEAMYNDAQKRQADQLLEELTALPAALPTSEELMNEQSIVSGEGEQGGLPPMAGQSSNQGDDSSLDQRMFEPEPTEQPTEPVNIGSGELPTGQGVGLDGGLGLQEPTNGDMQEGV*
Ga0068518_1071557	Ga0068518_10715571	F101016	MADVEAMYNDAQKRQADQLLEELTALPAALPTSEELMNEQSEIGSGEGQQGGLPAMVGQSSDQGDDGALDQRMSEPQPTEQPTAPIDIGGSALPTGESVGLDGGLGLQEPTNGDMQEGF*