3300004640: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_135m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004640
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111048 | Ga0066615
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_135m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105642249
• Sequencing Scaffolds: 56
• Novel Protein Genes: 61
• Associated Families: 54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	34
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Candidatus Thermoprofundales → Marine Group III euryarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F002187	Metagenome / Metatranscriptome	585	Y
F002874	Metagenome / Metatranscriptome	524	Y
F003091	Metagenome / Metatranscriptome	508	Y
F004989	Metagenome / Metatranscriptome	416	Y
F005649	Metagenome / Metatranscriptome	394	Y
F006917	Metagenome / Metatranscriptome	362	Y
F007774	Metagenome / Metatranscriptome	345	Y
F008692	Metagenome / Metatranscriptome	329	Y
F009177	Metagenome / Metatranscriptome	322	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066615_1001577	Not Available	1014
Ga0066615_1003380	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	614
Ga0066615_1004488	Not Available	1948
Ga0066615_1005018	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	521
Ga0066615_1006978	Not Available	1134
Ga0066615_1008419	Not Available	2160
Ga0066615_1010006	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	534
Ga0066615_1011415	Not Available	575
Ga0066615_1014662	All Organisms → cellular organisms → Bacteria	1840
Ga0066615_1015037	Not Available	1039

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066615_1001577	Ga0066615_10015771	F089034	MNNFTKGIMILFGSILAWSSLEVTGSYIFAEGAGPVTLLSTRFLIATILFGVTILFQKYRTGENLFLVEKQDIKRFLTNG
Ga0066615_1001577	Ga0066615_10015772	F062150	VKNSVIGYVEVGDSVSFSKPILFSYVKSDDSKWFATFFFGPTWNDEKIYVEELFYKPYSVANGGKFNIGFGQQLIPYGSNLPYLDLTRRDMFTYQTSWDVGELVLGRGVSVYGALGEKGYLETYFGDDINHIWSDYASARVSYEVANQFVALSVDNQERQSIDVSGLNDKIEYIAEYSLSDEYYFARAVIKPGLYGLNLLAGYESFPNKDAKPLYGVMWTFDGEYPGSFLSAEFSGEGDITFKINADLGILKLGDSKNE*
Ga0066615_1003380	Ga0066615_10033801	F092224	MKIKNAIFENKQYFETIGKIHTSDQLSVMDAYRINRLVKKLNELQEEYSELKKKIFAQHGTPGKEEGTVE
Ga0066615_1004488	Ga0066615_10044882	F101351	MNNPAFSETVPNELRELGYVPPIIKSYDNNGINVWLDSRRKIYDVPFWQFTMDGIQWMVLDERHGSASQFYSHYKLAKGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWHDKIEIINCDANDFKGSCDFFVNRSL*
Ga0066615_1005018	Ga0066615_10050182	F085556	MKENQVFKMNKKWREFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKG
Ga0066615_1006978	Ga0066615_10069781	F096498	MGMYDEINVDIKCPKCGSNEMDWQSKDYMCGLDMIDPDKVQEFYTYCDKCDTFTTYRRGAENDDDTYTKCRAEPYSLDEVEKMGFKYKCDGR*
Ga0066615_1008419	Ga0066615_10084191	F077400	MSGFGNPNLSNYIYPVQTSEQRNQDPQEDPRVQVSEMLKGPVRGEGESYEDYKIRMKVEYKLTRDYLK
Ga0066615_1010006	Ga0066615_10100061	F018015	MNKKQEFNMNKKWREFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGHHAKNDFIKSLKKYIR*
Ga0066615_1011415	Ga0066615_10114151	F006917	KFIENLHKEINRKKIRNERIFNTIYLIGVFTFDFIIDTGEWI*
Ga0066615_1014662	Ga0066615_10146624	F004989	MSIRLEKINTEKERLEGDRTVLLNRLQEYQQGLVQTQQQIQAIGGAIQTCNFFMGKNQSPQESEDKEESSGDDS*
Ga0066615_1015037	Ga0066615_10150371	F006917	HSPVSMINTEKFIINLHKEINRRRVRKERILNTIYLVGVFVFDFIIDTGEWV*
Ga0066615_1018075	Ga0066615_10180751	F001048	WRFNYLKRNGGEITVTDRTPEMDVKEFNRIELLVNSRVRWELGSENFMKWDSCGYKDIPTLARAYGIT*
Ga0066615_1018075	Ga0066615_10180753	F018265	MSMERHTLRAVKLTQNIFELNRVNRELVAVRRIVTELEQRK
Ga0066615_1021929	Ga0066615_10219294	F062676	MRVKGKRIINSEDALEFANSIRGQYIISQALTIANGVLETYEIDDDVMRAEPSNRADMEFLLKAFPLYGIHEQANWKEDDDEESE*
Ga0066615_1022210	Ga0066615_10222101	F037503	KSVMEVELPIGLGGFTAYQPLMNSECHDTAAAVRAWVLRSMSERERTQTIS*
Ga0066615_1025739	Ga0066615_10257391	F037503	MHFGAASELSVIEVELLIGLGGFTAYQPLTNSECYNIYPGVRVWVLRSISERERTQTIS*
Ga0066615_1026954	Ga0066615_10269541	F008692	TKREIEKETSYMPSSEEEFQADLDAEDMRYHQYCREQQEMYDDDYMNWSGKR*
Ga0066615_1027829	Ga0066615_10278294	F062676	MRVKGKRIINSEEALEFANSIRGQYIISQALTIANGVLETYEIDDDVMRAEPNNRADMEFLLKAFPLYGIHEQANWKEDDDEESE
Ga0066615_1032299	Ga0066615_10322993	F008692	MKTKREIEKETSYMPSSEEEFQADLDADDMRYHQYCREQQEMYDDEYMNWSGKR*
Ga0066615_1032879	Ga0066615_10328792	F067124	MKQSEMKMPKRVINYRDRVTQQEYNVDSKIVSTRPTHKVKSVEMIDGVEYYVFSI*
Ga0066615_1037356	Ga0066615_10373561	F098166	FTMNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTNSDIDINSDNPLTFIRLLK*
Ga0066615_1038951	Ga0066615_10389511	F064816	MAEQDFKTVDIIDYSMQSKPTQVHDAFDQIITSKLVDGLETRKREVSARMFLDKEEISIEEPETTETQ*
Ga0066615_1039964	Ga0066615_10399641	F029271	MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPCFDYDTAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQRFGAQK*
Ga0066615_1042821	Ga0066615_10428211	F054922	MIETKTTYNETTDGFVPSPEGIYPCHVVAVNSREYNGNKVFNFQFQVADEVSKLQLPKMVSDGNGWYVAAKDDKGDVVTQPGKPFSGRKFYSKGVWFTPDPMKEERWKNRIYKDFCENLGVIFRTEGDDTILDEVEESDVVGKPCLARVITNEYEKDGETKRTMQVNSVTAWKDGVMLSADELDSDVPF*
Ga0066615_1045772	Ga0066615_10457723	F067124	CESMKMPKRVINYRDRVTQQEYNVDSKIVSTRPTHKVKSVEMIDGVKYYVLST*
Ga0066615_1151526	Ga0066615_11515261	F013302	AFEGTIDKGHKKDMQTFGETYTGNQDAAGGVMALLEVALSDFANLEADTKASEVEGQKGYDDFMVESKKSKAMKSKKIEMDTADRAAAEAKLQEDVAELKSTQDELIAADKYHEKLVPQCIDQGMTWDELVKARQSEIASLKQALEILGQQGSIETSA*
Ga0066615_1161271	Ga0066615_11612711	F078582	GSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVMPPLGLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIK
Ga0066615_1162112	Ga0066615_11621121	F045150	MGVKYISGFRGLDHAKQHLRRSVHLGSALTSGYTVLNPAEAFDQ
Ga0066615_1167663	Ga0066615_11676633	F019228	MKKNKVGKRKRKGWRKRNPVCTLCTTYRWMGNIKGRHPMRELKQLEKEKYEK*
Ga0066615_1168813	Ga0066615_11688132	F057436	VSRTNYSTLGNFFEFDEDDLEFERVTNNIDTVDIDYGVEVIFKYYRKHGFPHYKIRE
Ga0066615_1170630	Ga0066615_11706303	F055180	MIKFEEYLQLNADDSIEQVMNGEWIQKSRSSWKIVDEKDNKLEIHNDGHDPELNGESWSVHSNTFAPKAFAFFL*
Ga0066615_1176160	Ga0066615_11761603	F012072	MKKYHIKIKDKVVHRTDNMKEALKITAKIFRDGHEEVSLHGGRLGKWWNG*
Ga0066615_1176160	Ga0066615_11761604	F016055	LHIERHGSSRKSKRFANKRERLQVKNYLKGKSSEDFVDETDDEDIEYEEIPYKN*
Ga0066615_1178172	Ga0066615_11781722	F013570	KREELMTNYNSLVDKRIELEKQLEITNTDILTMRGAILLSNEFIEEEEKPEPKPLFPEKEVVVNDLDKEKDGGQKNK*
Ga0066615_1193095	Ga0066615_11930952	F101492	MFKTAAELGREFRSEIIPMLKSKGFDLKIASSRKSYYHDGKLGVKITKVPTNFPVWVSKYSRWDRTKNADRLLATIEDRINILISNNNVKLETKGDGGLDIRVVVEFGQSVKYIPYEKDESNESD*
Ga0066615_1197321	Ga0066615_11973211	F023622	MKTFKEFKKKSPTPITEQVYFKVSIPDMSAMFMRASSEAAVKMDMRKKLKPDVVKEVSIERVTKSEMRKIYRDMGQGKEDETEK
Ga0066615_1207440	Ga0066615_12074401	F052275	LSNSNSYKCHKCGYTARVWDAPDKAPIATVDTRHCLGCKSLVEVPIEFHGGGLIEDPDVVPSFLNRCPDCNSSNVQSWDTKHSCPRCGEHMTSELAN*
Ga0066615_1208736	Ga0066615_12087362	F002874	MKEEIDLSLNRSLEELESSYWEFIEATEGEDSAEWSKSVQEDVSVLEGCLMKMGVL*
Ga0066615_1210421	Ga0066615_12104212	F088935	MSSIGGLDVAFGARMQVVRTNVMCLALAGTGLANVTTVPKYILNTYKEALKGTVIEPDFLYIYELAQINASGLATTAAVANNLFNLDNSGDGTADVTALEVGGVLRDIRQTPLGTNSAFADTTATNAAFSSAY
Ga0066615_1211080	Ga0066615_12110802	F012509	YSISGDGARVKDAIQGVIASKIMAGMEAKKAEVAQAMFNTVSHEKQEVADTFVAAAEKETSQ*
Ga0066615_1214419	Ga0066615_12144191	F017149	TDNKQFDGWKQCNEKYKSAKDVVGYWNFDNVVGDMVIDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI*
Ga0066615_1216117	Ga0066615_12161173	F084709	MNKNRKYNIGGVMVETDNSVPNKFRVLKMAMDNWARKNHLLSIDSPKGRKYGDDVDRYNKLKELFEYHKPNFIKKQHMVEVNDLFKMYNNG*
Ga0066615_1217156	Ga0066615_12171561	F061392	VIVLQLKTFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
Ga0066615_1220956	Ga0066615_12209562	F021646	MRKILSILFYHIGHTADRLLWFNSPMSEWVEDMLGNLHQWAMWKSYEYDDYYEIW*
Ga0066615_1224058	Ga0066615_12240582	F097134	MILDTLVMLLVLTAVIGSVAIWASWNEINTNEWIANNVDGCPFKYKWQMADDLSASRLGNGSKMDVKFSYLMVMPKSEVKKLWLLNKEGK*
Ga0066615_1227596	Ga0066615_12275962	F029556	MSMIKFDDSKIKEIRGRKLKGLPPIPSTEDIVIASKDAKGGSELIYERVKERVPDDLWNYFQIILSRVRDYEDKPKILWFQDTSNDPEVQFLKDKSQRDKFDRFVFPSDWSLEKYHLDLGIEYEKSVV
Ga0066615_1228030	Ga0066615_12280302	F002187	MKFKNGIFLDVKFMETVGKCNEYEDWEPKGAYWFNRLVKKLRSAQEDYNDTRTKLVKKYADEPDEEGNVKVAEVHIPAFTTAMGELMEEEFEVSGIKPIKFPEGLRLSPIEMGLLEEVVDMSVFLDDDDEDE*
Ga0066615_1231607	Ga0066615_12316071	F009177	TGQDVTFYGDTTSSNLLWDQSADALEFGNSFLTITDARTTGTMDVRGLTIDVSNKLDTGSSNDRIGIDVDVIGDVSGYTIRDAVAIRAVSRQSTGAEVTRLNTPIHSVLDMANTASANNSGTTLSGAYGLAIDHDDTIATRTGQPTAFISFGELYVGGTESIETAYLFDIFPEGKTGDATYGTAADVAFYNDGAQYATTRDTMILNSTDGAPATNAGDHLLMEPDPFDAILLESGTESGGGGDDMGFITTESGESVVLEDSSQDNPTGASNFILFETGSQDADGVLKLRVNGEDKYIQLYNLVS*
Ga0066615_1234071	Ga0066615_12340711	F003091	MSTHPVKPITKPGEGKQHQKHISQELYLKERYQISLGLKGPKRLEGESHEDFQIRRKAENGLLKEYRRGVWMTDGNCTALTTEPCRNCE*
Ga0066615_1234132	Ga0066615_12341328	F021646	MTKRKLLSIMFYHIGHNVDRLLWMISPTYEWLEDKLADLYQWTMRKSAEYDDYYEVWEKQ
Ga0066615_1234365	Ga0066615_12343651	F035965	MTVIDYLIKKFDGVMIDDYGWEHYKVDGKDYDIRFDRSRMEWACDCKAFIFRYKFKKMYCKHILEIQDRKLAQRRGRASAGVV*
Ga0066615_1236384	Ga0066615_12363842	F012509	MSDYSTEDIVKYSISSDGSRVKEAIQSVIANKIMKNLEAKKAEVAQAMFNTVSHPKQEVADTFV
Ga0066615_1237251	Ga0066615_12372512	F005649	VLFDKAVQQSLSKTREKRLTNLNSDKSLAGLEIDWQFANTERMFDIFVEPVMDSQPTYAYA*
Ga0066615_1237292	Ga0066615_12372921	F026291	VGDQILDHFSRSELVCQTTGEVRLASGFGEALERLGVELDAPIYLNSA
Ga0066615_1238810	Ga0066615_12388102	F081425	MVTYETMYPTVSPVEDKIKLLLVMKGYDRNKIAFRNDVYNRELRYGYWEFIKTKDIEYVETFSGVKFNTFSTEDDDCGPLISYPFKEIKNARPRHSAD*
Ga0066615_1242022	Ga0066615_12420221	F087734	MNEELLKIYEDNTNEFGLPVFDLFTWQNLNTKYIDPDPSLPMSKRAKVMIDTMIHFFEKHHPKFPFREFDMHEVRQSFYKLCNLNL
Ga0066615_1242912	Ga0066615_12429121	F009992	MNDDVPHDIGYVLGNGPSRDRSRTRYEGVTYGCNSIHTEMGVDVLVCMDTWYQFEVIASGYPAKHKCLFGGYNPIPIDIPPESLNPPHYDIHYYNPKDREFADNWYYYATSAADYEKAKKENYALSYWKPDCGYVCYIPEGYKIKEIDYGVIPIEDLRPPSGAYALQEALKSGHDKIEVFGFDSIAGVFSTSSQLAYKEHDSGDETIIQSRLDKWMSFYKTVTEQFTDIEIIWHKET*
Ga0066615_1243587	Ga0066615_12435873	F007774	MSKNDKLTPEQEKELIQLTAEIEAEAIKMKMDYEEHPSHESGSVVYVNEQSTLLKDEKEELGNQALVSSSQILAKELKKQKKKGDKK*
Ga0066615_1244310	Ga0066615_12443102	F039110	VSKAVSKKADAKKTSAKLKLKAIADGSHGIDGGIYTYKKGDTITLSKKAHYDSMKELACFNEV*
Ga0066615_1249979	Ga0066615_12499793	F025857	MTLHRIAPGCTFESEDDVVMNPVIGRKNSVAVKSPKPFYRTSELDEIPDNFAERMRKFKRAEVRTEEREIITPNGFDVSIAFNKGAYMVIPKEDL*
Ga0066615_1253142	Ga0066615_12531422	F049038	MTNEIKYLNLGSLTPDIYSSVWEYGNLIDTNCPTVIKFSSKKHIVAFFGNSELDISSFFNGEIEYPIVRVYEDPDNIDDDKLAYWIEGPNCFNFILYFSRDVKPLFLQAVRECCFKFGIETFWNGRNDIFFKIGNKQKKFFGCSYEVINNCHVTVGTITYQFDSKLATKVKELDINNVLKTPSFESDSGNVSDVVGGLWEVDSTIDPIKFNDEFLKILMKKL