3300004639: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_120m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004639
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111053 | Ga0066620
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_120m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102233838
• Sequencing Scaffolds: 37
• Novel Protein Genes: 41
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	23
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → Methylotenera mobilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aquimarina → Aquimarina atlantica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000040	Metagenome / Metatranscriptome	3998	Y
F003091	Metagenome / Metatranscriptome	508	Y
F004261	Metagenome / Metatranscriptome	446	Y
F004989	Metagenome / Metatranscriptome	416	Y
F006551	Metagenome / Metatranscriptome	370	Y
F010325	Metagenome / Metatranscriptome	305	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013570	Metagenome / Metatranscriptome	270	N
F013645	Metagenome / Metatranscriptome	269	Y
F023217	Metagenome / Metatranscriptome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066620_1003624	All Organisms → Viruses → Predicted Viral	1731
Ga0066620_1004168	Not Available	623
Ga0066620_1007725	All Organisms → Viruses → Predicted Viral	1903
Ga0066620_1010418	Not Available	1243
Ga0066620_1010629	Not Available	1336
Ga0066620_1011181	Not Available	1168
Ga0066620_1012491	Not Available	4529
Ga0066620_1015914	Not Available	818
Ga0066620_1017971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → Methylotenera mobilis	1042
Ga0066620_1024594	Not Available	751

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066620_1003624	Ga0066620_10036242	F051054	MRTIKLTTFNDLGDCDRQDVNDLISALVRMGYEVWMTDTFVCFNLGNEDVIKDENK*
Ga0066620_1004168	Ga0066620_10041681	F077771	MYYTYYFQGMVFEKEVIEKDPKKAFLSYSEKFKNIDYLNGFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDVGPGAKKNYVYYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMITWDGILRESTLTKNSAYDSEIKPGKNVEFLYPDVKGEIK*
Ga0066620_1007725	Ga0066620_10077252	F039110	VSKAVSKKADAKKTSAKLKLKAIADGSHGIDGGIYTFKKGDTVTVSKKAHYDSMKELACFNEV*
Ga0066620_1010418	Ga0066620_10104184	F098166	TMNILVSKDEEQSIYTTAMRFTMADGDMLLAATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTSSDIDINSDNHLTFIRLLK*
Ga0066620_1010629	Ga0066620_10106293	F029271	MSKLSDLQDIKELLDVDFRKDKFLENSYNNSPCFGYDAAESYVANIHQFLSEKYGEAVIYNFMQEVERLRITTLKMYIESNIVSYQRFGAQK*
Ga0066620_1011181	Ga0066620_10111812	F029271	MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYDAAKSYVANIHQFLSKKYGEAVIYNFMQEVESLRITTLKMYIESNIAAYRRFGAQK*
Ga0066620_1012491	Ga0066620_10124915	F096498	MYDEINVDIKCPKCGSNEMDWQSKDYMCGLDMIDPDKVQEFYTHCDKCDTFTTYRRGAENDDAYTKCRAEPYSLDEVEKMGFKYKCDGR*
Ga0066620_1015911	Ga0066620_10159111	F066454	MSIRFDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNV
Ga0066620_1015914	Ga0066620_10159142	F029271	MSKLSDLQDIKELLDVDFRKDKFLYNQYNNSPCFNYDAAESYVANIHQFLSEKYGEAVIYNFIQEVESLRITTLKMYIESNIAAYRRFTIKTIDDSNKSYYSILTVKKGI*
Ga0066620_1017971	Ga0066620_10179712	F075397	MKYWHKRVEVVSFFDLDQESQDIEWKDDDNAEELAFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFS*
Ga0066620_1024594	Ga0066620_10245941	F083344	MITTIEFRNDDLTMLRGVMACTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHFDGELPERGVIIPSIKIPFSVHTVIITIDDNKITVDKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFEGELSLIYVNIPELPEFTFGIMPARY*
Ga0066620_1027575	Ga0066620_10275752	F083344	MITTIKFTSDDLTMLRGVMSCTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHLDGELPENGVIIPSIKIPFSIHTVIITIEDDTVTADKYSKQGKTTEVYQTIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
Ga0066620_1130769	Ga0066620_11307691	F074750	QIIPGLSSGTLITMLDDYQKPIEEIQTGDVIKTFDMASEDYDGAHPMMNTPTYTKVRKVKKQRATKLVKIKFSDGTDLITTIGHPLRMQAMPCGIVYREDGIETRGCSDVDGGMEEYDRVGARAKMVTDIDEVDDWAKDLGYHFCCNVGMESYSPEKKYTESKYDIEDLRFNNVVTRNEWETAQLKIGGFPILGTGKAIEDIRMEVEGNYTELVNDAVTI
Ga0066620_1165921	Ga0066620_11659213	F024324	KRAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
Ga0066620_1174844	Ga0066620_11748441	F089034	MNNFTKGIMILFGSILAWSSLEVTGSYIFAEGAGPVTLLSTRFLIATILFGVTILFQKYRTGENLFLVEKQDIKRFLTNGAFLAVHLITYWFGWEYLDPNIPVIYGIFYFYPFV
Ga0066620_1178925	Ga0066620_11789251	F084718	ACLPNFEAPPQPVELKLPTLKKVGEVKELPKIKLPTLKKVN*
Ga0066620_1189475	Ga0066620_11894751	F076490	VSRTNYSTLGNFFEFDEDDLEFERVTNNIDTVDIDYGVEVIFKYYRKHGFPHYKIREDEKHSHMRKLRKFDTTTI
Ga0066620_1196136	Ga0066620_11961361	F000040	AGSWKCWLQPAVSAMKVVLCLALACAAFAAEVTPVQKVIEMLNGMLEKGKKEKHDEQVQFAAYKQFCDDTTVEKKRAIAEANEQIEVLKADIEKYTATAEKLTKEIAELEADIALWNGDIKAATKVREIEKGDYDTTHTDYSESIDALERAIAVLKKQSHDRKQAELLQLKKVKLIPDDAKKAIDAFLQEDPEEGLAVSAPEANAYE
Ga0066620_1209580	Ga0066620_12095801	F030240	TMFRSQPTDQKLGDYNGITKVDSSTTVAFTGSNAGAAFICEVVTNVVVHGSGGGTIPGTSLTADTLYPIGVNKVTIGASGIVYVLHR*
Ga0066620_1209980	Ga0066620_12099802	F101492	MFKTAAELGREFRSEIIPMLKSKGFDLKIASSRKSYYHDGKLGVKITKVPTNFPVWVSKYSRWDRTKNADRLLATIEDRINILISNNNVKLETKGDGGLDIRVGVEFGQSVKYIPYEKDESD
Ga0066620_1211344	Ga0066620_12113442	F010325	MLRKDQVESKLDQLQLAVERLKSSLVVPTDPGDVGTPIQVVVNALQQIENQIDNVINLIQLED*
Ga0066620_1221613	Ga0066620_12216132	F025857	PGCFFTPEEDTPINPVVGKKTSMLTNTPKPFYRTSELDEIPDNFAERMRKFKRAEVRTEEREIITPNGFDVSIAFNKGAYMVIPKEDL*
Ga0066620_1223746	Ga0066620_12237462	F004261	VLALAASLHSIITQTARLARDMWNSISLNDVWERELRKWEDII*
Ga0066620_1225505	Ga0066620_12255051	F061349	MSFLTEMLSSDAKISSKRTVGFAAFFMLICCWGADTFSAFED
Ga0066620_1229356	Ga0066620_12293562	F054922	MIETKTTYNETTDGFVPSPEGIYPCHVVAVNSREYNGNKVFNFQFQVADEVSKLQLPKMVSDGNGWYVAAKDDRGDVVTQPGKPFSGRKFYSKGVWFTPDPMKEERWKNRIYKDFCENLGVIFRTEGDDTILDEVEEADVVGKPCLASVITNEYEKDGETKRTMQVNSVTAWKDGVMLSADELDSDVPF*
Ga0066620_1230633	Ga0066620_12306333	F078263	MELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEESIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
Ga0066620_1231775	Ga0066620_12317753	F063075	MSRTKDSTNQDGDDSLQGLDIDWHLANAEMGFDNFIAPIQDVQPTYAYA*
Ga0066620_1231792	Ga0066620_12317922	F023217	IMKKWKTAKAIASSKKIDKGLKAFGKSIGLDKPFFAAKTFDDVTGTWKVCPCCGGDSLEADILKLI*
Ga0066620_1234116	Ga0066620_12341161	F081198	VEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESVPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYI
Ga0066620_1235176	Ga0066620_12351761	F006551	KGSSGAVIDRDSSSTFDSTVSSPSGTLGTNGIMTDDVLRTFLRSIRKKAGKDPNVFLGSHEVYSEIQGLFMPSVRIANPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGVPFIPTKDAPSNACDSDEVGRLFALDTSDAEGYGYPRLGIMVSIPTEYYEATRRSPGYPFINNAFVEKGVFRTMGETVCRSFIAQGKIR
Ga0066620_1238635	Ga0066620_12386353	F012582	MTVSQKKLKHLSATMLHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDNKLNKKEMEMCNQLYEYYGNVYVKF*
Ga0066620_1238635	Ga0066620_12386354	F003091	KQRQKHVSQDRYLKERYQISAGLKGPKRLEGESFEDFRTRRKAENGLLKEYLRGVWIKNEE*
Ga0066620_1239579	Ga0066620_12395791	F044148	WEEALRQVYAVNEESVEVKEASNTSWMDVQAKKVESKWKSMNKSARKKWLSSMADMAADEKTKQSVLDDVLDDYGLTEAYTDLGGDGGEEGTTTSETDKDYDLHQFSDPKYVPAYTDKSFQTAPDKTGIGQDLGDKQSGTPKKAKGQATAAKTPAKVDAKTGHEKPAVGTKSDTPDKAIGKADSAKIAPRVTTKAGVATQKEEVEIGEKITEKRSIAFARKFYQKEKNNV*
Ga0066620_1240187	Ga0066620_12401871	F004989	MSIRLEKINTEKERLEGDRTVLLNRLQEYQQGLVQTQQQIQAIGGAIQTCNFFMEKNQSPQESEDKEESSGDDS*
Ga0066620_1240968	Ga0066620_12409682	F013645	MNPAFLFGTAFNIAYWHRKYHSGTICKGVSNPQASIALSGCEKEEIP
Ga0066620_1242321	Ga0066620_12423211	F013570	MELEKIKKKREELMTNYNSLVDKRIELEKQLEITNTDILTMRGAILLSNEFIEEEENPEPKPLFPEKEVVVNDLDKEK
Ga0066620_1242653	Ga0066620_12426531	F040635	LRFRIVIQKLADVRDEDTPDIDNPKTMRATLEGDKLMKEVLNGGYNVHPVPPPNSEIKERTTRR*
Ga0066620_1245910	Ga0066620_12459103	F101852	MSEQELTKRQNRMIETHKKRMYHLRVNGLDWQATHQRRWEENSPCWEDKCDCKFKRGT*
Ga0066620_1249504	Ga0066620_12495041	F078263	MELLHDSDQLVGSLDCQLKRLEEKIDTSQPAALMKDIHRIDDEIKHFKDVEITTNTVVSSVKEHDETIKKLEERTRHKFVEMTAQIEAVVTDKHKNLVSKINDISSRVDKLEEKIDLAVRELKSEARKTSVLRKLLWLD*
Ga0066620_1250375	Ga0066620_12503751	F096688	MRIIKGLAVVGYASIMLLVLTGGRSANEAVFNAGHQACDAQYNMDAMQAFEMDPAEPFVQCHVAVNEAYPAAWNNWRRQNARTRGIAAASNSLGGKRSC*
Ga0066620_1253078	Ga0066620_12530781	F096688	MGIIKSLAVVGYATVMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGLELAGNRFRGGGGC*