3300004590: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 28_LOW6 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004590
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111172 | Ga0066508
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 28_LOW6 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56888376
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F002020	Metagenome / Metatranscriptome	603	Y
F017072	Metagenome / Metatranscriptome	243	Y
F025923	Metagenome / Metatranscriptome	199	Y
F082737	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066508_1001079	Not Available	561
Ga0066508_1013145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	760
Ga0066508_1126111	Not Available	616
Ga0066508_1129130	Not Available	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066508_1001079	Ga0066508_10010791	F082737	MLGGPPASLPVRSQNLETDFHSPTKTNLLPDRRGGVRVPALPLQLCGTLAVSPVRSDLHPRPVSRTAWDFYDQNPLLPDPAPLQPASLNRCSPSGLFTLTDQSTRSHWPTGNLPPATPDLPSLPTGGRIRYQHQRIIVPAPLRLCQLAV
Ga0066508_1013145	Ga0066508_10131451	F025923	SKRSGLKDVAESTAGIIPGDRGMAGGSWCRPPLQAAKAE*
Ga0066508_1013145	Ga0066508_10131452	F001633	LAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLSSEASAPGSATPCRERHARRGADTPAIFIVSRRHRYHGDGTSFWLAVGPALRV*
Ga0066508_1126111	Ga0066508_11261111	F017072	DNPRRLGKSQVRLVDLAPLKPGRKARQRRQDSPVPLAVFAHRQTRMRDLAARDDEKPFRTESSNPGKFRFRMNRSHPEGGKLLLCISTVRTTLAGSHETGTAQRKTPKGGQKERTHREEHGNLAGSVKNFRAPAMLKTTPLDCEIKGSLREKRRDPWPRANAPSQAVADPEPVVKTRTKIRRRVLTWFASRWRNHQPKRAEKPH
Ga0066508_1129130	Ga0066508_11291301	F002020	MHGMEHREQKRRTIRLSAPHWPFSPAYGSMLPGSPLAASCPEPAARNGFSLARNSCRLSATSIPGSKLPACYFASFQIGFRARSALRLHYRIPRFAPVAAASLPLARCTSTTRFGLPRLRSPLPSGIFTSLGIKAFNRVCRLPVRLTNPPDFLSLPAARPDESWGCGS