3300004571: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 32_HOW6 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004571
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111174 | Ga0066510
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 32_HOW6 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26661363
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F004916	Metagenome / Metatranscriptome	418	Y
F046210	Metagenome / Metatranscriptome	151	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066510_110940	Not Available	607
Ga0066510_143281	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	598
Ga0066510_146949	Not Available	792

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066510_110940	Ga0066510_1109401	F046210	LVIVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNINS*
Ga0066510_143281	Ga0066510_1432811	F004916	NPSLAMKSTYVLLAFVAMIALSFVAASELEAPAACHPTCRWQCDDPQCPAQCHPVCERPKCQVHCEETPCAACKIHCDKPQCNVRCPKDLCESTDCPKCETVCAPAKCRTACTAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCEKPACAYKKPAAVATANNTCCACNQANIQASMIQASENSEPTAETPSFLEL
Ga0066510_146949	Ga0066510_1469492	F001633	ALFPVRTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVAGRDLSSEASAPGSVALPEAARRTWCGHVCNTKFSRRHRCHGDGASWWLAVGPALRV*