NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004459

3300004459: Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)



Overview

Basic Information
IMG/M Taxon OID3300004459 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111382 | Gp0110217 | Ga0065201
Sample NameMarine microbial communities from Galveston Bay (MSEDA12C- fraction 11)
Sequencing StatusPermanent Draft
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size168394860
Sequencing Scaffolds30
Novel Protein Genes36
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin2121
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.21
All Organisms → Viruses → unclassified viruses → Virus sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea3
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biomemarine benthic featuremarine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationGalveston Bay, USA
CoordinatesLat. (o)29.5Long. (o)-94.76Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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