NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004238

3300004238: Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00



Overview

Basic Information
IMG/M Taxon OID3300004238 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111384 | Gp0110931 | Ga0066635
Sample NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1015148906
Sequencing Scaffolds89
Novel Protein Genes96
Associated Families68

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available58
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla3
All Organisms → cellular organisms → Bacteria → PVC group2
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium1
All Organisms → cellular organisms → Archaea → TACK group1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_232
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia → Candidatus Jettenia caeni1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeaquifergroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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