3300004182: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 2_LOW4

Overview

Basic Information

• IMG/M Taxon OID: 3300004182
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114290 | Gp0111066 | Ga0066402
• Sample Name: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 2_LOW4
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 232898262
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Lake Washington, Seattle, Washington
• Coordinates
  • Lat. (^o): 48.3807
  • Long. (^o): -122.1599
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y
F055309	Metagenome	139	Y
F057450	Metagenome	136	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066402_1003455	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1998
Ga0066402_1026908	Not Available	865
Ga0066402_1062412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis	608
Ga0066402_1062514	All Organisms → cellular organisms → Bacteria	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066402_1003455	Ga0066402_10034553	F057450	MINLQNHYEKLQRQSGRFVNISRLPVLGLLLLLAIVVSSCTPSKPVAEADYPTKIVGNWLGTVGDMKESITFNSDGGFVAQLRPLGFISNTLSQGVTGIIRGSWVLNGKTITLKITGAEDERVKNTTTSSTILSFTTNELEMKSNRGENSKFLRETSL*
Ga0066402_1026908	Ga0066402_10269081	F055309	MVTRSCAFSKKWRLLAKDTLGLNRAKPVAKTRLRQIKSAVGPLSDFYLLQYANNVRLPLTVNPLQTLTLPR
Ga0066402_1062412	Ga0066402_10624121	F055309	MVTRSCTFLKKWCLLARDKLGLSLANPVAKAHLRQIKSVVGPLSDFYLLQYGNNVRLPLTVNPLQTLTLPR
Ga0066402_1062514	Ga0066402_10625141	F000982	MPSYRSTSRGRRLLVHHRLRGRAYPTLPYWERLHLMLLEEAEKRGKTPPPAPLVHGLESEPTQADRMERLDEQVAWADRNQLLHRIQMFFDAMPASGWVKTDK*