Sample 3300003887

Overview

Basic Information
IMG/M Taxon OID	3300003887 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0113782 \| Gp0109338 \| Ga0062443
Sample Name	Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3
Sequencing Status	Permanent Draft
Sequencing Center	University of Wisconsin, Madison
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	175020349
Sequencing Scaffolds	10
Novel Protein Genes	12
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_14	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	Middleton, WI
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009620	Metagenome / Metatranscriptome	315	Y
F020864	Metagenome / Metatranscriptome	221	Y
F045136	Metagenome	153	Y
F066898	Metagenome / Metatranscriptome	126	Y
F079531	Metagenome	115	Y
F085790	Metagenome / Metatranscriptome	111	Y
F090578	Metagenome	108	Y
F096266	Metagenome	105	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0062443_1000335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	850724	Open in IMG/M
Ga0062443_1007219	All Organisms → cellular organisms → Bacteria → Proteobacteria	25268	Open in IMG/M
Ga0062443_1007495	All Organisms → cellular organisms → Bacteria → Proteobacteria	28790	Open in IMG/M
Ga0062443_1010485	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	18407	Open in IMG/M
Ga0062443_1023043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	19513	Open in IMG/M
Ga0062443_1031984	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
Ga0062443_1035998	All Organisms → cellular organisms → Bacteria	17598	Open in IMG/M
Ga0062443_1043107	Not Available	725	Open in IMG/M
Ga0062443_1075623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium	1571	Open in IMG/M
Ga0062443_1128736	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_14	594	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0062443_1000335

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales

850724

Open in IMG/M

Ga0062443_1007219

All Organisms → cellular organisms → Bacteria → Proteobacteria

25268

Open in IMG/M

Ga0062443_1007495

All Organisms → cellular organisms → Bacteria → Proteobacteria

28790

Open in IMG/M

Ga0062443_1010485

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter

18407

19513

All Organisms → cellular organisms → Bacteria

2538

Open in IMG/M

Ga0062443_1035998

All Organisms → cellular organisms → Bacteria

17598

Open in IMG/M

Ga0062443_1043107

Not Available

725

Open in IMG/M

Ga0062443_1075623

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium

1571

Open in IMG/M

Ga0062443_1128736

594

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0062443_1000335	Ga0062443_1000335285	F096266	MIDARVVFLLMTSLMLAILVGIGIATYRKGRKQKMEEPKYRMLDED*
Ga0062443_1007219	Ga0062443_100721916	F079531	MIRLARIAVLACALAAAAPASAQYTFTQPGQQPQPVQQLQVWNNVARVNLGVSFYNSTYWNCFYWGWTVSCSGGAWASYIPFTVGPQVDFNLQGMNNISIGFNVMMGTVSGQLTTGQSASASATVWQPTLDYVAKFGPSTQDTVGRFRVGGGMYIGPNSTYGGAFRIGGGASFLNANRLGVGLDLVLEGGSYQGYWIGGLQLLASPEFHF*
Ga0062443_1007495	Ga0062443_100749516	F079531	MRTWIRMAVLAVTLAFAAPAAAQYTFTQPGMQPQPVQQLQLWNNVARVNLGVSFFNSGYYNCNYWYGYYPTYTCGSGSFVSYIPFTVGPQVDFNLGGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSNRLGIGLDLVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1010485	Ga0062443_10104851	F066898	MTTQTQNPTTLHFHVSKHGWKDLFVVSFLAIVLGAFVAQISSTPKHSFASPPMASAPLNATSNG*
Ga0062443_1010485	Ga0062443_101048511	F066898	MTNQNQNPTTPHFHVSKHGWKDLFVVSFLAIVLGSFVAQISSAPKHTSASPPMASAPLNATSNG*
Ga0062443_1010485	Ga0062443_10104858	F066898	MTTQTQKTIHFNVSKSTGWKDAFVVTCLAIVLGAFVAQISSTPDHSRTAQPMASVSATAAVNG*
Ga0062443_1023043	Ga0062443_10230432	F090578	MDRCRGASPVLIANAMWDTNPWAPWGLIHVVRDGVATVTETGLWFLLQRHPDAVEADGKGYWLYLDQPYRAERAGDRAFFKLMPAPSRRRGG*
Ga0062443_1031984	Ga0062443_10319842	F009620	VVMALEAWDKFATPGEKFDETEAPSEALDRREMIVLMGESHSGQKQKFLPIICSGNGKFFGFGESEAPTMDXXXXXXXXXXXXXAQLLPTKVPDAAMRDLALTMLKVKGVGSATPGAIPRLHRNRR*
Ga0062443_1035998	Ga0062443_103599812	F079531	MRHTIRAAVLSSMLAVTMPAAAQYTFTQPGQQPQPVQQLELWNNVARVNLGVSFFNSGYYNCNYWGGYYPTYTCGSGSFVSYIPFTVGPQVDFNLAGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSHRLGIGLDVVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1043107	Ga0062443_10431072	F020864	MAYKSGADGVTKSGKTKGKNLGDSGPSVGTQKGGKGSKGVTTDAMKSVGRNLARVKNQG*
Ga0062443_1075623	Ga0062443_10756233	F085790	PCVNPCSPNLSLKSDPACIAFRSLSAFSYLGSARHLGAGVAA*
Ga0062443_1128736	Ga0062443_11287362	F045136	RKDAVYRMRVARKTLAAIKRVAAANGEDASEWGRAIIETELRRDLAAIQLRDQLRAAKPGSLTEDEALDLVNEAKRATRAR*

Scaffold ID

Protein ID

Family

Sequence

Ga0062443_1000335

Ga0062443_1000335285

F096266

MIDARVVFLLMTSLMLAILVGIGIATYRKGRKQKMEEPKYRMLDED*

Ga0062443_1007219

Ga0062443_100721916

F079531

MIRLARIAVLACALAAAAPASAQYTFTQPGQQPQPVQQLQVWNNVARVNLGVSFYNSTYWNCFYWGWTVSCSGGAWASYIPFTVGPQVDFNLQGMNNISIGFNVMMGTVSGQLTTGQSASASATVWQPTLDYVAKFGPSTQDTVGRFRVGGGMYIGPNSTYGGAFRIGGGASFLNANRLGVGLDLVLEGGSYQGYWIGGLQLLASPEFHF*

Ga0062443_1007495

Ga0062443_100749516

F079531

MRTWIRMAVLAVTLAFAAPAAAQYTFTQPGMQPQPVQQLQLWNNVARVNLGVSFFNSGYYNCNYWYGYYPTYTCGSGSFVSYIPFTVGPQVDFNLGGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSNRLGIGLDLVLEGGGYNGYWIGGLQLVASPEFHF*

Ga0062443_1010485

Ga0062443_10104851

F066898

MTTQTQNPTTLHFHVSKHGWKDLFVVSFLAIVLGAFVAQISSTPKHSFASPPMASAPLNATSNG*

Ga0062443_1010485

Ga0062443_101048511

F066898

MTNQNQNPTTPHFHVSKHGWKDLFVVSFLAIVLGSFVAQISSAPKHTSASPPMASAPLNATSNG*

Ga0062443_1010485

Ga0062443_10104858

F066898

MTTQTQKTIHFNVSKSTGWKDAFVVTCLAIVLGAFVAQISSTPDHSRTAQPMASVSATAAVNG*

Ga0062443_1023043

Ga0062443_10230432

F090578

MDRCRGASPVLIANAMWDTNPWAPWGLIHVVRDGVATVTETGLWFLLQRHPDAVEADGKGYWLYLDQPYRAERAGDRAFFKLMPAPSRRRGG*

Ga0062443_1031984

Ga0062443_10319842

F009620

VVMALEAWDKFATPGEKFDETEAPSEALDRREMIVLMGESHSGQKQKFLPIICSGNGKFFGFGESEAPTMDXXXXXXXXXXXXXAQLLPTKVPDAAMRDLALTMLKVKGVGSATPGAIPRLHRNRR*

Ga0062443_1035998

Ga0062443_103599812

F079531

MRHTIRAAVLSSMLAVTMPAAAQYTFTQPGQQPQPVQQLELWNNVARVNLGVSFFNSGYYNCNYWGGYYPTYTCGSGSFVSYIPFTVGPQVDFNLAGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSHRLGIGLDVVLEGGGYNGYWIGGLQLVASPEFHF*

Ga0062443_1043107

Ga0062443_10431072

F020864

MAYKSGADGVTKSGKTKGKNLGDSGPSVGTQKGGKGSKGVTTDAMKSVGRNLARVKNQG*

Ga0062443_1075623

Ga0062443_10756233

F085790

PCVNPCSPNLSLKSDPACIAFRSLSAFSYLGSARHLGAGVAA*

Ga0062443_1128736

Ga0062443_11287362

F045136

RKDAVYRMRVARKTLAAIKRVAAANGEDASEWGRAIIETELRRDLAAIQLRDQLRAAKPGSLTEDEALDLVNEAKRATRAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003887: Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences