3300003878: Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0142_20120611_metagen

Overview

Basic Information

• IMG/M Taxon OID: 3300003878
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113941 | Gp0109647 | Ga0063282
• Sample Name: Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0142_20120611_metagen
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 240189182
• Sequencing Scaffolds: 12
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Plastic Marine Debris Microbial Communities From The Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Plastic Marine Debris Microbial Communities From The Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → manufactured plastic
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 39.978
  • Long. (^o): -68.882
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F003058	Metagenome / Metatranscriptome	510	Y
F003647	Metagenome / Metatranscriptome	475	Y
F005454	Metagenome / Metatranscriptome	400	Y
F007772	Metagenome / Metatranscriptome	345	Y
F010928	Metagenome / Metatranscriptome	297	N
F012788	Metagenome / Metatranscriptome	277	Y
F013049	Metagenome / Metatranscriptome	275	Y
F023447	Metagenome / Metatranscriptome	210	Y
F023593	Metagenome / Metatranscriptome	209	N
F028441	Metagenome / Metatranscriptome	191	Y
F060924	Metagenome / Metatranscriptome	132	Y
F077438	Metagenome / Metatranscriptome	117	Y
F082762	Metagenome / Metatranscriptome	113	Y
F101868	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0063282_1000327	Not Available	532
Ga0063282_1005644	All Organisms → cellular organisms → Eukaryota → Sar	3517
Ga0063282_1012360	Not Available	1718
Ga0063282_1014805	Not Available	731
Ga0063282_1025030	All Organisms → cellular organisms → Bacteria	3741
Ga0063282_1027408	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	909
Ga0063282_1030657	All Organisms → Viruses → Predicted Viral	1981
Ga0063282_1044167	All Organisms → Viruses → Predicted Viral	1568
Ga0063282_1059207	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1359
Ga0063282_1066039	Not Available	1036
Ga0063282_1071624	Not Available	1732
Ga0063282_1098156	Not Available	970

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063282_1000327	Ga0063282_10003271	F077438	CCVYSTHRVERPFAQSRFETLFLWKLQVEISSDLMPTVEKEISSNKN*
Ga0063282_1005644	Ga0063282_10056442	F082762	MLNLIVAGASYLFPGGRALKLVKDGINVTNSTNPLILTKNITLIVIDCCTPPPVRLAAHCAAAGSLIAASIISPNPVTIG*
Ga0063282_1012360	Ga0063282_10123602	F012788	MLNTNITTEIQTTIDELNQYLNGNVTKTSLQITLDELISKL*
Ga0063282_1012360	Ga0063282_10123603	F023447	METQAFMGTGELIPRLMAQVGSASFGMALAKKNGFLNADGGLSALGMQRNGMNAEQRAIDRAGGTGIYNPTTNRVTQY*
Ga0063282_1014805	Ga0063282_10148052	F007772	MCTKSYTLLKISWRLYDKHYTKLTDEQRSNVLDIYYDFY*
Ga0063282_1014805	Ga0063282_10148053	F005454	MRIIKHFNPHFPERETYKCTIRYTTKFGSLDEVNQWRDDQLKNEDYYKSLEESNTKAAGVFYQTLTYKGD*
Ga0063282_1025030	Ga0063282_10250303	F028441	MSLKQLIKLEDKAKEVWVISPTLHYDTENKDFSELVSVNLGEKTKYRYIVPATKTVEKNIKLYKKMYKVSEADIANNFLILPDSEFIPFMEETAIYNASGKCVACAAPATEDSNDVIKFNPETSKTMAKAFKSVWKKYKRTNP*
Ga0063282_1027408	Ga0063282_10274081	F003647	KNRASNKAFAKQTILKLDIEDYKRSLKQGTYGGITYEEAEQVLESYKTELQVWNYITELIEKQ*
Ga0063282_1030657	Ga0063282_10306572	F003058	MTESEMNKLADLVVSKIINRQKAYDEEFKAEIQDMVGKDADIEFGTITEDEIIAEELIKLQDRLNQLEDKEDYEAASIVANKIKHLKNKYNL*
Ga0063282_1044167	Ga0063282_10441674	F023593	MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG*
Ga0063282_1059207	Ga0063282_10592072	F060924	MGIGTGIGNSIPRGITGNAGFPTPFFEILAENGDFLIAESGANPTFLITEQQ*
Ga0063282_1066039	Ga0063282_10660393	F013049	MDQDVETQFHTIDLFIRSVLDDMDKVSKSTRKIDIMAYIESWKNELKTVQHIINL*
Ga0063282_1071624	Ga0063282_10716242	F010928	MGSGQLVDRLTAQVRDRGFAIALLKKRGDMAADGTLTAKGEARNRMTAEERALDRAGETSASATYNPETNRVTKNK*
Ga0063282_1098156	Ga0063282_10981563	F000918	MYQTNQQAWDEVSNEFNESNRRTKICIEMFGQENLIGLTDDQRNLFWQSI*
Ga0063282_1098156	Ga0063282_10981565	F101868	MEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIRL*