3300003828: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29May08

Overview

Basic Information

• IMG/M Taxon OID: 3300003828
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110170 | Gp0088330 | Ga0007868
• Sample Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29May08
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42847997
• Sequencing Scaffolds: 30
• Novel Protein Genes: 34
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F001774	Metagenome / Metatranscriptome	636	Y
F007848	Metagenome	343	Y
F010592	Metagenome	301	Y
F013252	Metagenome	273	Y
F022834	Metagenome / Metatranscriptome	212	Y
F023062	Metagenome	211	Y
F027373	Metagenome	194	N
F028086	Metagenome	192	Y
F035159	Metagenome	172	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007868_1000783	All Organisms → cellular organisms → Bacteria → Proteobacteria	3505
Ga0007868_1001206	All Organisms → cellular organisms → Bacteria	2690
Ga0007868_1001442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2422
Ga0007868_1002200	All Organisms → cellular organisms → Bacteria → Proteobacteria	1881
Ga0007868_1002813	All Organisms → cellular organisms → Bacteria → Proteobacteria	1617
Ga0007868_1003943	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1283
Ga0007868_1004793	Not Available	1131
Ga0007868_1005076	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1093
Ga0007868_1006360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	953
Ga0007868_1006893	Not Available	903

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007868_1000783	Ga0007868_10007834	F079582	MSKLESYYEAPYDDQASEEQEWEIAELMKDXFNPCKWGXXNEAFSATQDXEVIXQIEEMLEKRDFEALGRKLWNLSYEYNEXYATRMITQQY*
Ga0007868_1001206	Ga0007868_10012065	F076929	MSGSRNARNAASIMNRANCGGPKKAGLMGFIGGIGIGGVSPSQRRRFCGPQGTCTVDMNTVFRTKCVGNYSNPSQVKASAARRGMF*
Ga0007868_1001442	Ga0007868_10014421	F100247	MSYITATKGSNITYDQFAFGIGTQARITLEESEVWHKQYIKEDKEAQKEWAYEWRVNYLMGFLQVSSNEADRILSTPKGDRKPAHQKAYMRANSQFGYHIVRTEKSGSFKQVKVTVDKVVELFEQLSKAEQAKFMR
Ga0007868_1002200	Ga0007868_10022003	F059611	MKDYSLPYLTAKKLLEAYYMACINQDKGLAYQIANDLVEXVLKLXXITHDA*
Ga0007868_1002296	Ga0007868_10022965	F104339	MTDYADSLLKLNRLTKSFLNAVLKNRKTEAYLIACSITETAQELEDWASHN
Ga0007868_1002813	Ga0007868_10028134	F028086	MTDENIPFCGNMKVPSDDCEEAFFALYPNFFYEKSTALTLWTQGWQAALDYKESTKPLIQLI*
Ga0007868_1003943	Ga0007868_10039432	F035159	MFQTAFQANAFQNNAFQIVITPTNVKNGGDDAPWTREELKRLKGIQKKLRLAEAKRIAALKADQEARKQTITDLVNPKPVAKTQQSNIQSNQEVSVDIPSNLANIDRYIANLEQQQQDLQNAVLIRSAKLRLEQELAILEAKRQAELDDEEALLAXIL*
Ga0007868_1004793	Ga0007868_10047931	F049374	ADVTSGSSLFLQLTGSTATSVTFTSYSVTTGAAANMSAGDVVLINCIAY*
Ga0007868_1005076	Ga0007868_10050762	F086511	MKIDVKIIKENEDGSANAQVDFDKEGLETLVQWGLVGILTKAIDEYKIKPEEAETVVQPKRTKKQK*
Ga0007868_1006360	Ga0007868_10063604	F023062	MIMSFEIDPVKYGVLWNKVETYEAKFDELSKKIDKMETSIESLVAMANQSRGALWVGIGLVSTFSAFV
Ga0007868_1006893	Ga0007868_10068931	F091397	QMQHSGAETKQPILIDTAFTQPQKLQLRFRPLGRYAASTFTSXIRIPFNYSSLMHLPSKMDQRLDKFLXDLDIYHFNMADSTLXTIHSTFHVYRQNTREIFKLFEDLLASLPHVHVRQRRQWDVASFVAATAALSLATYNTVQISKLETAIEAQEAKTDLLTDISKLHEAHLHQLQGQMDGIGNEIQVVKLFQEWEVRIERIIAQISSDDAKLRAVIATFERIIITAFNKKLAPGALSVDVLNQIISHVNEIANRNNYHKFVHEPADLYDLEVSFIHRPEEQNIILILHVPFVEADQLLT
Ga0007868_1006978	Ga0007868_10069783	F098531	MANVSAYRFVGPTTAIAVTTSSSTSVTITPNGNDQANFCGFLNVGTTPIAITIAPA
Ga0007868_1008185	Ga0007868_10081852	F104339	MTDYAESLLKLNRLTKSFLNAVLKNKKTEAYLIACSITETAQELEDWASHNSVH*
Ga0007868_1008917	Ga0007868_10089171	F045569	VSIFVDIDPVKFGVTWQKVESMEYEVAELRKDVKQLLELANKGRGGFWAGMAIVSAFSTFVGFVAHYITNK*
Ga0007868_1009149	Ga0007868_10091491	F068380	MAYNSAFAPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEP
Ga0007868_1009455	Ga0007868_10094553	F013252	GGELGFRKSYKMTGTPGYAGGPGETTIDKGNSGSKRANNAVLNGNKMAKDSKVGQSKNLKDIKGGNFY*
Ga0007868_1009869	Ga0007868_10098691	F075594	NMSSVFTVNRDQIISLALRKLGVLELGSVPDSETVANASLALNLFVKQMATQGLKLWTVNELVVPLVNGQTEYVLGPVSQNPTTDLDTPKPLKIIQGWLRQITVSPPIDIPLQILSQQEYNTLGSKFSTGVANSIYYQIRQNSGNLYAYLTPNYNAAYQYELHVMAQQPIEDINYGSSIPNFPNEWMNTLVWNLADQLAIEYSLPVNHRQEIAQRAKMYQDQLTDWDVESTSTFFQADLR
Ga0007868_1010155	Ga0007868_10101551	F000952	ATSDYEQRTANVPQHKRIAQGEKLDGTAMEPKGGSKSSSSGSKSGGLSHASKKK*
Ga0007868_1010800	Ga0007868_10108002	F096501	MKLTPAIVRNLYSAIYCMKPFDRWNMPLPEEIQFIVDKDPAVMGSYLYDTGEDYE
Ga0007868_1011735	Ga0007868_10117351	F007848	MKDFIGSCLLGALLGCMFGYGSAHAQTYQMTSPQGYSQGTVQIQGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNAGYTVPSSPSTPPSPRVLQ
Ga0007868_1012551	Ga0007868_10125511	F010592	DLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLSRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF*
Ga0007868_1012941	Ga0007868_10129411	F088135	NIASGTTGSTSLVFNLRYASVKAMIAIFGGNAAAKSANKLMDSFDITSNNGDFQFNIGGVNYPQKSLSTLNNKAGIMMELRRAMGSILNNNVSLSVNVNEFNITDSSANPTTVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTATTQAYTPLLVLLYDAIIEIDPATKQIIMIQ*
Ga0007868_1014314	Ga0007868_10143142	F001774	QGTNMALKLKLEQTQFGVPAPEAYARITNFFGTKDNIQVQVAIHYDQAAREQNLATVREDAHYIGISDLKGDLLPAIYGVLKTFEQYKGAEDC*
Ga0007868_1014592	Ga0007868_10145921	F059611	DFSQPFLDAKRLLDEYYKAMIAQDRATAYQIANSFVETALKLEDIAHAD*
Ga0007868_1015252	Ga0007868_10152521	F056409	MTPLTYNQKRLISKNVLAACKDINKLNNTGYKFLYLCSGFIAHYDLNGFKAYYSEHSLHDDIERFAKQNQWSNFREGERDYHYYMAKRDCYNMILGGFVAKQYMDEVFNSPVQ
Ga0007868_1016243	Ga0007868_10162431	F048059	MIQNLSKKQLMVEMKLFLEDKDRGISIKNXCELAGISDRLFFXIFREGTAPLTEETQRGLNRAYKHWKEGKIRVMKKRTNETYPDYRKEPVQPLIPMSKLVMTNTGFKVQNKPLNRHDYANFDNILLKT*
Ga0007868_1016738	Ga0007868_10167381	F088135	MATSIAPNIASGTTGSTSLVFNLRYASVKSIIAIFGGNAAAQSANKLMDSYDITQNNGDFQFNIGGVNFPQKSLSTLNNKAGLMMELRRAMGSILNNNVSLAINQNEFGIIDGSVTTVVKPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIG
Ga0007868_1016792	Ga0007868_10167921	F088135	MGQEVQNEIIRMNPKLRIKSSSFATSIAPNIASATSGSTSLVFNLRYASVKAILAVFGGTDTARSANKLFDSFDITSSNGDYQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFNIADPAAAAPTSVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPI
Ga0007868_1016795	Ga0007868_10167951	F088135	CYNMIDMGMEVQNEIIRMNPKLRIKTSSMATSIAPNIASGTTGSTSLVFNLRYASVKSIIAIFGGNAAARSANKLMDSFDITSGNGDYQFNIGGVNYPQKSLSTLNNKAGLMMELRRAMGSILNNNVSLSINQNEFNIVDSAVTPTTVVLPGKFWVAQNLQKLTVNQKAFFTGVST
Ga0007868_1017104	Ga0007868_10171042	F049374	LQLTGSTATSVTFTSYSVTTGAAANMSAGDVVLINCIAY*
Ga0007868_1017595	Ga0007868_10175952	F027373	TNTETKITFYKPPEPVGYWCLYSGGPTTKFAMYQKPTDEQIKNTTELLGWIWEDAK*
Ga0007868_1017735	Ga0007868_10177351	F088135	SGTIGSTSLVYNLRYASVKAILAVFGGNDTTQSANKLFDSFDITSANGDFQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFTIIDGGATTAVKPAKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTITTQAYTPLLILLYDAIIEIDP
Ga0007868_1017876	Ga0007868_10178762	F036080	MNPKVDLESAIMVAWQTSEDIDLLFKHYGDAPRPMTEDEVLNALLGIKXLHDMRCEALMEKYCEKMELNQYCTDPEKLAARYE
Ga0007868_1018666	Ga0007868_10186661	F022834	RMGMAAGMSPYAFRDKAKAFLNLATTAAETDKRESEINALKQELAKKDEETAKIKAETDAKLAQMQDQMATILAAVGEKKPRKSKTVATEEA*