Sample 3300003762

Overview

Basic Information
IMG/M Taxon OID	3300003762 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053073 \| Gp0101315 \| Ga0055542
Sample Name	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	153174510
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	USA: North Carolina
Coordinates	Lat. (^o)	35.6667	Long. (^o)	-78.5097	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F027546	Metagenome / Metatranscriptome	194	Y
F040130	Metagenome / Metatranscriptome	162	Y
F049749	Metagenome	146	Y
F053329	Metagenome / Metatranscriptome	141	Y
F059118	Metagenome	134	N
F079536	Metagenome / Metatranscriptome	115	Y
F080973	Metagenome	114	Y
F096514	Metagenome / Metatranscriptome	104	Y
F103112	Metagenome	101	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055542_1002070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	7506	Open in IMG/M
Ga0055542_1004662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3259	Open in IMG/M
Ga0055542_1008016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2095	Open in IMG/M
Ga0055542_1011511	Not Available	1566	Open in IMG/M
Ga0055542_1018268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	1067	Open in IMG/M
Ga0055542_1025729	Not Available	798	Open in IMG/M
Ga0055542_1030069	Not Available	703	Open in IMG/M
Ga0055542_1032562	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
Ga0055542_1038636	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
Ga0055542_1041530	Not Available	540	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0055542_1002070

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas

7506

Open in IMG/M

Ga0055542_1004662

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae

3259

Open in IMG/M

Ga0055542_1008016

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

2095

Open in IMG/M

Ga0055542_1011511

Not Available

1566

Open in IMG/M

Ga0055542_1018268

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia

1067

Open in IMG/M

Ga0055542_1025729

Not Available

798

Open in IMG/M

Ga0055542_1030069

Not Available

703

Open in IMG/M

Ga0055542_1032562

All Organisms → cellular organisms → Bacteria

658

Open in IMG/M

Ga0055542_1038636

All Organisms → cellular organisms → Bacteria

572

Open in IMG/M

Ga0055542_1041530

Not Available

540

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0055542_1002070	Ga0055542_10020701	F059118	MLLIALMGGLLANPPVHDPLVPPMRVTTSFACHGTQRSITVARGIGRDAVVAVTANGRPMVGAAMSAIRIGLAPLIAIEEVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGTGGQAAVRDVG*
Ga0055542_1004662	Ga0055542_10046624	F096514	MDLIDLYHRRGIALVRSKLRGSAAARQGYGRLARMYSEQIERRRAMAPDSVDLTPAL*
Ga0055542_1008016	Ga0055542_10080162	F079536	MSIDSLSPAVGSGRANEVLLKQLGEVTVQASRLEHLAVEIAQNLKIDATVADAVPSLQDSKLTPPPWSTISAKDIKNWAASTGRLLEIRDSMFEASGAARFAGSRGDTIATESADGTVFPADEEYLGRYLKRLTRHLAAGSELLSRLDYHDENGQRWPLVTIYAQRAPGEGSEQTPLRLPEAWQRWLSA*
Ga0055542_1011511	Ga0055542_10115111	F080973	IARAICQLTGIPTCEIDLGPSRVLIHPDTRCGYNWSYPDAMVKARFRPFVHRAVSMVRDQYPILR*
Ga0055542_1018268	Ga0055542_10182681	F103112	SPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*
Ga0055542_1025729	Ga0055542_10257291	F049749	AWCSPFGEDGPAGELLALVDQVLAAIAAKPLEGAINHGDVQPMSSLRRALAKMKPAQLDTLTVQDESGDVICSFGAEGASVGDRSRAFEIFALLPPAAEAQQDKLLRMLLGYGLHYGYARSLGPDFNPLSEVRVKRGFFDTAIQVDGGRADWLVPEMDVRAGAVRGVYPANVFSAIGLARLAGSGLRLPPSAPTLGETLWRPSAAERAEILRLNPTYRDYLHFGDA*
Ga0055542_1030069	Ga0055542_10300691	F080973	MAYPTQGDVREMIAGAIGELTGTPAAEVDLGNSRVLVLTDTRSGYNWSYPDAMVKARFRPFVHRAVSMVRQQYPFLR*
Ga0055542_1032562	Ga0055542_10325621	F027546	MRVAGESKPAPWQPLGERVVRPQPVQPEWKPLAHAPCIEVNRQGQLRTNLPLPK*
Ga0055542_1038636	Ga0055542_10386361	F040130	VLLGVVLGMAVVAGSSPWRELLKKPEPVPSAPIQRERAPDQRV*
Ga0055542_1041530	Ga0055542_10415301	F053329	CSSRWAAAGSPTRKPRPDGIRFALDERAVDGVPQDSAMPPDLENPSAHEPALSRNHAAGVPRETASPAERALAPDGDAPMQSASATADDGTYVGQAGGYMGGPLPAVESGHAEVDKANVRGDGAYGFPAGPGVGVPGGEHQPAAQKPDVVPNPYPER*

Scaffold ID

Protein ID

Family

Sequence

Ga0055542_1002070

Ga0055542_10020701

F059118

MLLIALMGGLLANPPVHDPLVPPMRVTTSFACHGTQRSITVARGIGRDAVVAVTANGRPMVGAAMSAIRIGLAPLIAIEEVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGTGGQAAVRDVG*

Ga0055542_1004662

Ga0055542_10046624

F096514

MDLIDLYHRRGIALVRSKLRGSAAARQGYGRLARMYSEQIERRRAMAPDSVDLTPAL*

Ga0055542_1008016

Ga0055542_10080162

F079536

MSIDSLSPAVGSGRANEVLLKQLGEVTVQASRLEHLAVEIAQNLKIDATVADAVPSLQDSKLTPPPWSTISAKDIKNWAASTGRLLEIRDSMFEASGAARFAGSRGDTIATESADGTVFPADEEYLGRYLKRLTRHLAAGSELLSRLDYHDENGQRWPLVTIYAQRAPGEGSEQTPLRLPEAWQRWLSA*

Ga0055542_1011511

Ga0055542_10115111

F080973

IARAICQLTGIPTCEIDLGPSRVLIHPDTRCGYNWSYPDAMVKARFRPFVHRAVSMVRDQYPILR*

Ga0055542_1018268

Ga0055542_10182681

F103112

SPRIRQLVQPEMSVADRNLSITNEVRTIMTTTALPASTARRAAQQQGVELLVSRVAMGMLRWSQHRAARRRVTHEEMMLLRQVQKDSANAVDLSRLNRLG*

Ga0055542_1025729

Ga0055542_10257291

F049749

AWCSPFGEDGPAGELLALVDQVLAAIAAKPLEGAINHGDVQPMSSLRRALAKMKPAQLDTLTVQDESGDVICSFGAEGASVGDRSRAFEIFALLPPAAEAQQDKLLRMLLGYGLHYGYARSLGPDFNPLSEVRVKRGFFDTAIQVDGGRADWLVPEMDVRAGAVRGVYPANVFSAIGLARLAGSGLRLPPSAPTLGETLWRPSAAERAEILRLNPTYRDYLHFGDA*

Ga0055542_1030069

Ga0055542_10300691

F080973

MAYPTQGDVREMIAGAIGELTGTPAAEVDLGNSRVLVLTDTRSGYNWSYPDAMVKARFRPFVHRAVSMVRQQYPFLR*

Ga0055542_1032562

Ga0055542_10325621

F027546

MRVAGESKPAPWQPLGERVVRPQPVQPEWKPLAHAPCIEVNRQGQLRTNLPLPK*

Ga0055542_1038636

Ga0055542_10386361

F040130

VLLGVVLGMAVVAGSSPWRELLKKPEPVPSAPIQRERAPDQRV*

Ga0055542_1041530

Ga0055542_10415301

F053329

CSSRWAAAGSPTRKPRPDGIRFALDERAVDGVPQDSAMPPDLENPSAHEPALSRNHAAGVPRETASPAERALAPDGDAPMQSASATADDGTYVGQAGGYMGGPLPAVESGHAEVDKANVRGDGAYGFPAGPGVGVPGGEHQPAAQKPDVVPNPYPER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003762: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences