3300003731: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C49A8_80 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003731
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0061256 | Ga0006240
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C49A8_80 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4921626
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 35.7899
  • Long. (^o): -122.3199
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098669	Metagenome / Metatranscriptome	103	N
F099150	Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006240_100041	Not Available	508
Ga0006240_103387	Not Available	1115

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006240_100041	Ga0006240_1000411	F098669	METATRGRKQKWRLKEAEGLGRKQRIEEAERRELHESDQGLDSGHGLNPGRKVRRIDQTMEGSPEIVPAKIRKKP
Ga0006240_103387	Ga0006240_1033871	F099150	MKAAILACVLLGLSASAYAEEFEVADESNARFLYFNTSSTATSLTLLGALILLGVIGYLVYVGGLLGTSSYNRNDYYDAAAYDQQYANAYAQQAQYRSDDTKSPFNVMQILEGIEMLKNIYESTRS*