NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003722

3300003722: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2C (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300003722 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063445 | Gp0056425 | Ga0004770
Sample NameSoil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2C (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2352205
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biomedesertsoil biocrust
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationColorado Plateau and Sonoran desert
CoordinatesLat. (o)38.42Long. (o)-109.4099Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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