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Sample 3300003706
3300003706: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome)
Overview
| Basic Information |
|---|
| IMG/M Taxon OID | 3300003706 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0103008 | Gp0088355 | Ga0008095 |
| Sample Name | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
|---|
| Total Genome Size | 5107387 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 21 |
| Dataset Phylogeny |
|---|
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
|---|
| Name | Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales |
| Alternative Ecosystem Assignments |
|---|
| Environment Ontology (ENVO) | forest biome → land → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
|---|
| Location | Amazon Forest, Brazil |
| Coordinates | Lat. (o) | -10.0 | Long. (o) | -62.0 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map |
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Associated Families
Associated Scaffolds
Sequences
