Sample 3300003696

Basic Information
IMG/M Taxon OID	3300003696 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0069861 \| Gp0055818 \| Ga0003071
Sample Name	Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19075876
Sequencing Scaffolds	24
Novel Protein Genes	24
Associated Families	23

Dataset Contents

Total Genome Size

19075876

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. L2-4	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. L2-4

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium

Ecosystem Assignment (GOLD)
Name	Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Ecosystem Assignment (GOLD)

Name

Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → anthropogenic contamination feature → contaminated water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → anthropogenic contamination feature → contaminated water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-73.604444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

S. Glens Falls, New York, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-73.604444

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000329	Metagenome / Metatranscriptome	1287	Y
F000817	Metagenome / Metatranscriptome	879	Y
F003877	Metagenome / Metatranscriptome	464	Y
F005048	Metagenome / Metatranscriptome	413	Y
F005443	Metagenome / Metatranscriptome	400	Y
F014988	Metagenome / Metatranscriptome	258	Y
F020700	Metagenome / Metatranscriptome	222	Y
F022154	Metagenome / Metatranscriptome	215	Y
F025432	Metagenome / Metatranscriptome	201	Y
F027192	Metagenome / Metatranscriptome	195	Y
F029638	Metagenome / Metatranscriptome	187	Y
F030637	Metagenome / Metatranscriptome	184	Y
F032287	Metagenome / Metatranscriptome	180	Y
F034947	Metagenome / Metatranscriptome	173	Y
F035541	Metagenome / Metatranscriptome	172	Y
F072008	Metagenome / Metatranscriptome	121	Y
F081898	Metagenome / Metatranscriptome	114	Y
F085747	Metagenome / Metatranscriptome	111	N
F091449	Metagenome / Metatranscriptome	107	N
F092336	Metagenome / Metatranscriptome	107	N
F094695	Metagenome / Metatranscriptome	105	Y
F104200	Metagenome / Metatranscriptome	100	Y
F105212	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0003071J53072_100170	Not Available	646	Open in IMG/M
Ga0003071J53072_100479	Not Available	658	Open in IMG/M
Ga0003071J53072_100609	Not Available	818	Open in IMG/M
Ga0003071J53072_101096	Not Available	586	Open in IMG/M
Ga0003071J53072_101230	Not Available	510	Open in IMG/M
Ga0003071J53072_101841	Not Available	2458	Open in IMG/M
Ga0003071J53072_102356	Not Available	850	Open in IMG/M
Ga0003071J53072_103438	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	2619	Open in IMG/M
Ga0003071J53072_103440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. L2-4	537	Open in IMG/M
Ga0003071J53072_104004	Not Available	746	Open in IMG/M
Ga0003071J53072_106081	Not Available	1017	Open in IMG/M
Ga0003071J53072_106618	Not Available	1019	Open in IMG/M
Ga0003071J53072_107103	Not Available	890	Open in IMG/M
Ga0003071J53072_109594	Not Available	747	Open in IMG/M
Ga0003071J53072_109976	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1330	Open in IMG/M
Ga0003071J53072_110395	Not Available	984	Open in IMG/M
Ga0003071J53072_112455	Not Available	658	Open in IMG/M
Ga0003071J53072_115195	Not Available	502	Open in IMG/M
Ga0003071J53072_115583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nonmethylotrophicum	570	Open in IMG/M
Ga0003071J53072_116232	Not Available	592	Open in IMG/M
Ga0003071J53072_116860	Not Available	682	Open in IMG/M
Ga0003071J53072_118733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. C	571	Open in IMG/M
Ga0003071J53072_121862	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	542	Open in IMG/M
Ga0003071J53072_125404	Not Available	615	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0003071J53072_100170	Ga0003071J53072_1001701	F020700	MTARLSLHLRFAQATPKSFPSVFSDAAAGIAAIPIRLNFPVLFQVVKPGRGGQFF
Ga0003071J53072_100479	Ga0003071J53072_1004791	F094695	WLVMPSCSSLQRCELLDGGISVCSVRDPCFRETWDDVQWFSDESIESSWVQLFPVRRLPFPVASFRFSLSVVVRRFSRLRHSTLRLTCLLEVQPPINWPRMRTRSRLSCDFFPYSARQKQASVSPGASNLRHCPSSGFLTLSTSCSACNHGRFISPGLRSWGSTKSAYSLPSFDKGRVRRAWVSSPKLSPFP*
Ga0003071J53072_100609	Ga0003071J53072_1006092	F034947	VKRSYPEGIRLLLCISTERATLAGSINRLKPPNESHRKVDKRSARTGKDTQARQVA*
Ga0003071J53072_101096	Ga0003071J53072_1010961	F085747	FQVICLAAKLSAGIHGTELREQNRRTVSGLLPGAPFRTHRINAPRAVCWPNSVRSRRFVAVFHSLGTTACFQAPIPRSKLPACYFNALPNRSSEPFDRSLPRPNRFAPGSVGLNACGPFPGLRLSTSESASNLHSPLGVLAPAGSKRSIRFGSEKPTFRLRPIVLRSPQPFYCVVPVADHRSELATFPEVRCSSN
Ga0003071J53072_101230	Ga0003071J53072_1012301	F000817	QKWSVTFNRVKPEVSRIIPGDWGKAGSGWLTKPLLKRIARSGGGGRIHQFL*
Ga0003071J53072_101841	Ga0003071J53072_1018412	F092336	MDTFQTVGTPNRSRFGVFKLSKPKRLKARHGLPDSISEGAFVYRALSELDADGAWGTWLGEQRDASGVTRPVLLKHTGESNR
Ga0003071J53072_102356	Ga0003071J53072_1023561	F105212	HKRSPKNGGGGQEFLSELEAKSHGSQGSHHRWVGVQDHKE*
Ga0003071J53072_103438	Ga0003071J53072_1034382	F014988	MAFAPSTLITGAAVTGLTTPTYIITVDTPPAINAKQYAVTALGGTQTGVDVNTVSKPFSISFFRPVQLRSLPAANPVTGVIKNIPMNQYKLITRKGAQPSANTPAMTARITTTIEVPAGSDTYEPEEIRALISSHFGVGFSSASGIADTVLTGVL*
Ga0003071J53072_103440	Ga0003071J53072_1034401	F005048	SPKAEDCLQDFVVETFARAKADDGLIALVVEPRHVERQGLVRTLRELGHRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGAFS*
Ga0003071J53072_104004	Ga0003071J53072_1040041	F032287	MPGWPPQGAAWDRRIDPQDTERLAERQAARFGQEKIWRGTSMSKGCDEAVGNTSGPNPDPESPRKIRGQAARKGGWERGSGYEETRSPTRRESGDGCNEKTMAEAR
Ga0003071J53072_106081	Ga0003071J53072_1060811	F091449	MGFASLQHMRHRRYAFHERCLLATFRLQGLITLLAVYSLRSRAGFVSHRPRSWDLPFGAFSSWKVTGRFRLGRTHILFTRRYTLAPRCRGRLDKPQFLGFDPSESSWQSDVCLIRRLLVAPLGLTLPGYLTKALTRISPSLLSRASQQGLRLTAGASEFRSAFAPPHPPA*
Ga0003071J53072_106618	Ga0003071J53072_1066182	F081898	WRDLLFEGFSRVFGGSRSVAESDLPSREVAAPCRVLSLETLAPVLLRRSPHALYPCGPGYRVFTLQAPEQPANGARDPLVGFGSSSEAAQAPSRCPEPLVPQKPDARR*
Ga0003071J53072_107103	Ga0003071J53072_1071031	F030637	PPVPSFPLRRFEDSMRCPVSCRQDAVTSHEVGCSPEYYEHRPCGSIGLPAATSTLRFPARPGGSTSWVVPRFLAKTGSSSPELGLLFRVRTASNLPLARMRRAPSLGSRSQSRYQLRRSTCERGSQPHSMFRPRRFARPRRLTLSTTSWACFIPQPRPGLTFQGFVPTAQPNRLVDGPCPPVVDHHLLPPRCRVDSRSGDLAFRALIRVAIRSNRESV*
Ga0003071J53072_109594	Ga0003071J53072_1095941	F029638	APATTAPGSFAGSLIGQVIPATATVGTRIQCVPSNVNGFNGSTITIRKIDQFGQPLTAGFSIQQGPFWVEVARVSLGSTLASNPCATDGTQGSFNITGAGTSCANIGVITPAPFLSGLPAGQYRVVEVSGPNSYCTLVQVYNGNQAQNQSNTSAYNSGLLTQPVTLNLPDANIYDLQLTFVNSCVTPGGPSTATSQIAVVIGGSTPGLVNTSNIEISPAPGSDDDARLDIRIRDSASILIPNAHVTVLI
Ga0003071J53072_109976	Ga0003071J53072_1099761	F005443	GTEVEFGRISTVGRSTVFAQKVEVPSKPYRLTVSHQETGAGFSKRRRSLVRFDKTVASDVDVTKNVNVAAYMVLDAPIGALNASTELSNVLANLLSFGASLGASTTILYDCTGNGAAAMLSGGL*
Ga0003071J53072_110395	Ga0003071J53072_1103951	F025432	PTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGTPAGGQGQFIHTGVAAWVKDRVVVQLAVAPGVDNLDYKRMTYGVVLGFLPMNTDGMWLMPTFSMLAGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNNQSLRLDQNWRNGWSWNLQWHFLY*
Ga0003071J53072_112455	Ga0003071J53072_1124551	F035541	ACPGDVACSLGYIRSKGMANHRATTIRRSDVKRLALIFTLAILAGALMVPAANAQSNLTNLNNIPVTDTLAVGTFEWDVWSGYNKGFERGRRIGTRLFGSLYDNLEFGMKWGISRTAGPVELALKYKVIDEYNGRFPVSLAVGVEGITGNSQRTHFDPTVYAVLGIHDVKFIGHWWDWYVGVNHNPTGMDTEDNSLFGGFKYWINDDLQFIADYMGYDD
Ga0003071J53072_115195	Ga0003071J53072_1151952	F104200	MGARKRVLVAGERKAALEYRLRLGVASRRAVERRSLLRRKARQGERSRCCPAILIAKPQAVHAGSELRCGSGFL
Ga0003071J53072_115583	Ga0003071J53072_1155831	F003877	TAVRNCTGDEGGPFGFGDQVVDPKPPRAAAVKSRGGERRGNVGAMIPTGMIERGERKRTASEASKAD*
Ga0003071J53072_116232	Ga0003071J53072_1162321	F030637	SHEVGCSSECYEHRPCRLVGLPAATSTLRFPARPGGSTSCVVPRSLAKTGSSSPELGLLFRVRTASNLPLTRMREAPSMGSRSQSRYQLRRSTCERGSQPRPMFRPRRFTRPRRLSLSTTLWACFIPQPRPGFTFQGFVPTSWPGRLVDGPCPPVVDHHLLPPRCRDDSGSGDLAFRALIQLAIRSYRRSV*
Ga0003071J53072_116860	Ga0003071J53072_1168602	F000329	MEGTTMVADPEAQAYAGASLPVGELVTLVIEDERFFGWVASAAPAQSVACVAIEFTRGSQRVQERIPVENIQRLRDYLQAHPKLRTPQEQGAPLRQD*
Ga0003071J53072_118733	Ga0003071J53072_1187331	F072008	NSGYDVLEPAPASANFASPFSGDTCDQANNGWWQQSTVNGNYTWPFLSSSRQQADGYTNSEGVISACVYVDTTMAPGTTPGKVNVQAIVESPTMGGLYNPGLGTNPYYPLGNNLSLPNYLGVPNIVLTATITVVGPPASITVAAAPTSLNCGEKATITVTVKDSAGQNVSDRTRVELVTNFGGVIGGTT
Ga0003071J53072_121862	Ga0003071J53072_1218621	F027192	MKHLFFAFVLVIALASMAMAQSEAEALVTGEVVSALVLVNVDGDWGVFASGNTYVITPAGFKEPPGPGEGAGVVVGPVGFEVDGIGGEDVVVNLLLPGQMNSDDDASGLPLSNWMYGWNYDNDPGATFTAAGPVVGNAVTLSINSNAASGLFLGATVTVPT
Ga0003071J53072_125404	Ga0003071J53072_1254041	F022154	PKLYDVYRFADLSGVRNAMKKALAGVLAVALAGVMAGSAMAQVPNVQVYFDGAYTQTQRNCPGYAPFTTPDSLYVVMNNWNMNITGVDFSIQYPPALVYLADKAPDPILSVTIGQSPTGIAISWANCCPPDGFLPVLALKPLVMWGVCDCNQGPQAIVVGGYTPFGKTHPTAIRREDFTEHDGVGMTSLICPGFIAVQPSTWGQV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003696: Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences